Co-expression analysis

Gene ID	Ta.9136.2.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g36240: zinc knuckle (CCHC-type) family protein (HF=3e-2)
Module size	16 genes
NF	0.57
%ile	83.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.65	83.9	0.90	Ta.9136.2.S1_at	CA747260	-	-	3e-2	At5g36240	zinc knuckle (CCHC-type) family protein	O.I.	H.G.	S.X.	Please select
0.75	89.8	0.92	TaAffx.84078.1.S1_at	CA662819	-	-	6e+0	At4g30074	LCR19 (Low-molecular-weight cysteine-rich 19)	O.I.	H.G.	S.X.	Please select
0.70	87.2	0.93	Ta.28875.3.A1_at	CA630498	-	-	2e-5	At4g27700	rhodanese-like domain-containing protein	O.I.	H.G.	S.X.	Please select
0.64	83.6	0.92	Ta.25529.2.A1_at	CA678198	-	-	4e+0	At3g28560	-	O.I.	H.G.	S.X.	Please select
0.63	83.1	0.91	Ta.641.2.S1_at	BJ257632	-	-	3e-1	At2g20616	unknown protein	O.I.	H.G.	S.X.	Please select
0.61	82.0	0.93	Ta.25590.2.A1_at	CA635905	-	-	4e-3	At1g22850	-	O.I.	H.G.	S.X.	Please select
0.60	81.0	0.92	TaAffx.112041.1.S1_at	CA627614	-	-	6e-1	At2g01120	ORC4 (ORIGIN RECOGNITION COMPLEX SUBUNIT 4)	O.I.	H.G.	S.X.	Please select
0.59	79.8	0.92	Ta.2946.2.S1_at	CA635259	-	-	2e+1	At3g07590	small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative	O.I.	H.G.	S.X.	Please select
0.59	79.8	0.93	TaAffx.85825.1.S1_at	CA619282	-	-	4e+0	At2g28305	unknown protein	O.I.	H.G.	S.X.	Please select
0.57	79.2	0.92	TaAffx.105405.1.S1_at	CA734836	-	-	2e+0	At5g55570	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.92	TaAffx.82046.1.S1_at	CA636246	-	-	5e+0	At4g35320	unknown protein	O.I.	H.G.	S.X.	Please select
0.47	67.9	0.94	Ta.8368.2.S1_at	CA624505	-	-	2e-4	At5g61640	PMSR1 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 1)	O.I.	H.G.	S.X.	Please select
0.47	67.9	0.93	TaAffx.97533.2.S1_at	BG908072	-	-	3e+0	At1g65620	AS2 (ASYMMETRIC LEAVES 2)	O.I.	H.G.	S.X.	Please select
0.46	66.8	0.92	Ta.22659.2.A1_at	CA606185	-	-	3e-10	At5g61670	-	O.I.	H.G.	S.X.	Please select
0.43	62.2	0.92	TaAffx.57127.1.S1_at	CA636127	-	-	2e-2	At5g12470	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	56.1	0.93	Ta.23299.2.S1_at	CA681592	-	-	9e-1	At5g06380	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
34.0	99.9	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
6.0	98.0	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.3	96.7	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.8	96.0	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.6	95.6	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
3.3	95.0	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.3	95.0	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.2	94.8	GSM324488	Si- B+ rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
3.1	94.5	GSM324495	Si+ B+ rep3	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
3.0	94.3	GSM324484	Si- B- rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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