Co-expression analysis

Gene ID	Ta.9135.2.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g25190: nodulin, putative (HF=4e+0)
Module size	13 genes
NF	0.26
%ile	43.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	82.0	0.94	Ta.9135.2.S1_at	BQ172399	-	-	4e+0	At3g25190	nodulin, putative	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.96	Ta.14570.1.S1_at	BJ318968	-	-	6e-1	At5g02780	In2-1 protein, putative	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.97	Ta.1865.2.S1_x_at	CK152141	-	-	2e-2	At2g29125	RTFL2 (ROTUNDIFOLIA LIKE 2)	O.I.	H.G.	S.X.	Please select
0.32	44.4	0.96	Ta.11921.1.S1_at	CA722130	-	-	6e-1	At2g45380	-	O.I.	H.G.	S.X.	Please select
0.28	39.2	0.96	Ta.9628.2.S1_a_at	CD875755	-	-	7e-4	At4g34260	FUC95A	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.96	Ta.23833.4.S1_at	BJ253088	-	-	7e-6	At5g42890	SCP2 (STEROL CARRIER PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.97	Ta.22899.1.S1_at	CK212881	-	-	4e+0	At5g55750	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.96	Ta.9628.2.S1_at	CD875755	-	-	7e-4	At4g34260	FUC95A	O.I.	H.G.	S.X.	Please select
0.23	29.0	0.96	Ta.6161.3.S1_x_at	CA640525	-	-	1e-12	At5g50870	UBC27 (ubiquitin-conjugating enzyme 27)	O.I.	H.G.	S.X.	Please select
0.19	22.4	0.96	Ta.9344.1.S1_at	CD917189	-	-	1e-12	At1g27440	GUT2	O.I.	H.G.	S.X.	Please select
0.17	19.8	0.96	Ta.6564.3.S1_x_at	CA645400	-	-	2e-11	At5g04170	calcium-binding EF hand family protein	O.I.	H.G.	S.X.	Please select
0.16	18.2	0.96	Ta.23058.1.S1_at	BJ252424	-	-	2e-81	At5g28840	GME (GDP-D-MANNOSE 3',5'-EPIMERASE)	O.I.	H.G.	S.X.	Please select
0.15	17.1	0.96	Ta.3126.1.S1_at	AJ488493.1	acyl-[acyl-carrier protein] thioesterase	-	8e-19	At3g25110	AtFaTA (Arabidopsis FatA acyl-ACP thioesterase)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
14.3	99.5	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
12.4	99.4	GSM314262	tissue type: seedling, root - rep3	GSE12508	Transcription patterns during wheat development
5.4	97.7	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
4.4	96.8	GSM314260	tissue type: seedling, root - rep1	GSE12508	Transcription patterns during wheat development
3.1	94.5	GSM314254	tissue type: germinating seed, root - rep1	GSE12508	Transcription patterns during wheat development
3.1	94.5	GSM314255	tissue type: germinating seed, root - rep2	GSE12508	Transcription patterns during wheat development
3.0	94.3	GSM314256	tissue type: germinating seed, root - rep3	GSE12508	Transcription patterns during wheat development
2.6	92.9	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
2.2	91.0	GSM314252	tissue type: germinating seed, coleoptile - rep2	GSE12508	Transcription patterns during wheat development
2.1	90.3	GSM314251	tissue type: germinating seed, coleoptile - rep1	GSE12508	Transcription patterns during wheat development

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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