CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.9132.3.S1_s_at

Gene name
Homology with Arabidopsis Similar to At5g19740: peptidase M28 family protein (HF=7e-1)

Module size 6 genes

NF 0.44

%ile 69.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 72.4 0.90 Ta.9132.3.S1_s_at CA640252 - - 7e-1 At5g19740 peptidase M28 family protein O.I. H.G. S.X.
0.60 81.0 0.90 Ta.18704.1.S1_x_at BT009605.1 - - 3e-5 At5g53300 UBC10 (ubiquitin-conjugating enzyme 10) O.I. H.G. S.X.
0.46 66.8 0.88 Ta.5139.1.S1_at BT009575.1 - - 2e-1 At5g19740 peptidase M28 family protein O.I. H.G. S.X.
0.44 64.5 0.91 Ta.16216.1.S1_s_at CA602710 - - 4e+0 At3g51260 PAD1 (20s proteasome alpha subunit pad1) O.I. H.G. S.X.
0.43 62.2 0.90 Ta.18704.1.S1_at BT009605.1 - - 3e-5 At5g53300 UBC10 (ubiquitin-conjugating enzyme 10) O.I. H.G. S.X.
0.27 35.6 0.90 Ta.30706.1.S1_at AY543532.1 expansin EXPA6 - 8e+0 At2g03090 ATEXPA15 (ARABIDOPSIS THALIANA EXPANSIN A15) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
33.8 99.9 GSM314261 tissue type: seedling, root - rep2 GSE12508 Transcription patterns during wheat development
29.1 99.8 GSM314262 tissue type: seedling, root - rep3 GSE12508 Transcription patterns during wheat development
14.4 99.5 GSM298067 Leaf tissue of Paragon at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
8.4 98.9 GSM314260 tissue type: seedling, root - rep1 GSE12508 Transcription patterns during wheat development
6.4 98.2 GSM138162 genotype E5 developing seed at 5 days after anthesis, biological rep1 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
6.2 98.1 GSM314256 tissue type: germinating seed, root - rep3 GSE12508 Transcription patterns during wheat development
5.1 97.5 GSM314254 tissue type: germinating seed, root - rep1 GSE12508 Transcription patterns during wheat development
4.6 97.0 GSM111233 genotype H8 developing seed at 5 days after anthesis, biological rep2 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
4.6 97.0 GSM298070 Leaf tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
4.5 96.9 GSM250896 Tc_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

A co-expression module including the maize gene, Zm.10769.1.A1_at, orthologous to the query gene, Ta.9132.3.S1_s_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.71 88.2 Zm.10769.1.A1_at At5g19740 glutamate carboxypeptidase 2 - 2e+0 At2g18890 protein kinase family protein O.I. H.G. S.X.
0.77 92.1 Zm.2603.1.A1_at At5g19740 - - 5e-2 At4g23430 short-chain dehydrogenase/reductase (SDR) family protein O.I. H.G. S.X.
0.67 85.8 Zm.17354.1.S1_at At5g19740 - - 4e+0 At3g23360 protein phosphatase 2C, putative / PP2C, putative O.I. H.G. S.X.
0.67 85.8 Zm.3770.1.S1_a_at At5g19740 hypothetical protein LOC100278844 - 1e-43 At5g07290 AML4 (ARABIDOPSIS MEI2-LIKE 4) O.I. H.G. S.X.
0.60 77.8 Zm.5048.7.A1_x_at At5g19740 - - 3e-11 At5g07090 40S ribosomal protein S4 (RPS4B) O.I. H.G. S.X.
0.59 76.1 Zm.11834.1.S1_at At5g19740 hypothetical protein LOC100191186 - 4e-1 At1g06475 unknown protein O.I. H.G. S.X.
0.55 71.6 Zm.1711.1.A1_at At5g19740 clathrin assembly protein - 3e-1 At2g34800 unknown protein O.I. H.G. S.X.
0.38 44.2 Zm.11968.1.A1_at At5g19740 hypothetical protein LOC100216643 - 3e+0 At4g12240 zinc finger (C2H2 type) family protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera

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