Co-expression analysis

Gene ID	Ta.9132.3.S1_s_at
Gene name
Homology with Arabidopsis	Similar to At5g19740: peptidase M28 family protein (HF=7e-1)
Module size	6 genes
NF	0.44
%ile	69.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	72.4	0.90	Ta.9132.3.S1_s_at	CA640252	-	-	7e-1	At5g19740	peptidase M28 family protein	O.I.	H.G.	S.X.	Please select
0.60	81.0	0.90	Ta.18704.1.S1_x_at	BT009605.1	-	-	3e-5	At5g53300	UBC10 (ubiquitin-conjugating enzyme 10)	O.I.	H.G.	S.X.	Please select
0.46	66.8	0.88	Ta.5139.1.S1_at	BT009575.1	-	-	2e-1	At5g19740	peptidase M28 family protein	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.91	Ta.16216.1.S1_s_at	CA602710	-	-	4e+0	At3g51260	PAD1 (20s proteasome alpha subunit pad1)	O.I.	H.G.	S.X.	Please select
0.43	62.2	0.90	Ta.18704.1.S1_at	BT009605.1	-	-	3e-5	At5g53300	UBC10 (ubiquitin-conjugating enzyme 10)	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.90	Ta.30706.1.S1_at	AY543532.1	expansin EXPA6	-	8e+0	At2g03090	ATEXPA15 (ARABIDOPSIS THALIANA EXPANSIN A15)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
33.8	99.9	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
29.1	99.8	GSM314262	tissue type: seedling, root - rep3	GSE12508	Transcription patterns during wheat development
14.4	99.5	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
8.4	98.9	GSM314260	tissue type: seedling, root - rep1	GSE12508	Transcription patterns during wheat development
6.4	98.2	GSM138162	genotype E5 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
6.2	98.1	GSM314256	tissue type: germinating seed, root - rep3	GSE12508	Transcription patterns during wheat development
5.1	97.5	GSM314254	tissue type: germinating seed, root - rep1	GSE12508	Transcription patterns during wheat development
4.6	97.0	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
4.6	97.0	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.5	96.9	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

A co-expression module including the grape gene, 1621337_at, orthologous to the query gene, Ta.9132.3.S1_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.88	95.4	1621337_at	At5g19740	hypothetical protein LOC100266978	-	5e-12	At5g10370	helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related	O.I.	H.G.	S.X.	Please select
0.56	79.4	1612551_at	At5g19740	hypothetical protein LOC100251825	-	4e+0	At3g19650	cyclin-related	O.I.	H.G.	S.X.	Please select
0.49	69.3	1614366_at	At5g19740	hypothetical protein LOC100259831	-	1e-31	At3g55320	PGP20 (P-GLYCOPROTEIN 20)	O.I.	H.G.	S.X.	Please select
0.44	64.1	1611549_at	At5g19740	hypothetical protein LOC100243262	-	6e-99	At1g09770	ATCDC5 (ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5)	O.I.	H.G.	S.X.	Please select
0.40	57.7	1607324_at	At5g19740	hypothetical protein LOC100244533	-	1e-13	At3g26720	glycosyl hydrolase family 38 protein	O.I.	H.G.	S.X.	Please select
0.36	50.7	1612020_at	At5g19740	hypothetical protein LOC100255081	-	6e-9	At4g01000	ubiquitin family protein	O.I.	H.G.	S.X.	Please select
0.32	43.1	1611589_at	At5g19740	hypothetical protein LOC100241492	-	2e-61	At3g06670	binding	O.I.	H.G.	S.X.	Please select
0.30	39.4	1622755_at	At5g19740	hypothetical protein LOC100267937	-	8e-1	At4g22520	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.28	37.7	1607803_at	At5g19740	hypothetical protein LOC100264130	-	7e-8	At1g20200	EMB2719 (EMBRYO DEFECTIVE 2719)	O.I.	H.G.	S.X.	Please select
0.27	34.0	1607370_at	At5g19740	hypothetical protein LOC100264871	-	8e-124	At3g52140	tetratricopeptide repeat (TPR)-containing protein	O.I.	H.G.	S.X.	Please select
0.22	25.6	1613671_at	At5g19740	hypothetical protein LOC100241076	-	2e-2	At4g36690	ATU2AF65A	O.I.	H.G.	S.X.	Please select
0.22	25.6	1620772_at	At5g19740	hypothetical protein LOC100252015	-	3e-26	At5g53620	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	22.4	1612774_at	At5g19740	hypothetical protein LOC100261536	-	2e+0	At5g40900	unknown protein	O.I.	H.G.	S.X.	Please select
0.19	20.9	1609738_at	At5g19740	similar to ZFWD1 (zinc finger WD40 repeat protein 1); nucleic acid binding / zinc ion binding	-	1e+0	At4g17565	F-box family protein	O.I.	H.G.	S.X.	Please select
0.19	20.9	1619258_at	At5g19740	hypothetical protein LOC100255734	-	6e+0	At5g63480	unknown protein	O.I.	H.G.	S.X.	Please select
0.17	18.2	1618240_at	At5g19740	hypothetical protein LOC100258476	-	3e-13	At1g01650	aspartic-type endopeptidase/ peptidase	O.I.	H.G.	S.X.	Please select
0.16	16.7	1621237_at	At5g19740	hypothetical protein LOC100246278	-	3e-10	At5g38640	eukaryotic translation initiation factor 2B family protein / eIF-2B family protein	O.I.	H.G.	S.X.	Please select
0.12	12.1	1616402_a_at	At5g19740	hypothetical protein LOC100241076	-	2e-15	At4g36690	ATU2AF65A	O.I.	H.G.	S.X.	Please select
0.06	6.8	1617687_at	At5g19740	hypothetical protein LOC100265217	-	4e-1	At4g00310	EDA8 (EMBRYO SAC DEVELOPMENT ARREST 8)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Zea_mays

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