Co-expression analysis

Gene ID	Ta.9132.3.S1_s_at
Gene name
Homology with Arabidopsis	Similar to At5g19740: peptidase M28 family protein (HF=7e-1)
Module size	6 genes
NF	0.44
%ile	69.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	72.4	0.90	Ta.9132.3.S1_s_at	CA640252	-	-	7e-1	At5g19740	peptidase M28 family protein	O.I.	H.G.	S.X.	Please select
0.60	81.0	0.90	Ta.18704.1.S1_x_at	BT009605.1	-	-	3e-5	At5g53300	UBC10 (ubiquitin-conjugating enzyme 10)	O.I.	H.G.	S.X.	Please select
0.46	66.8	0.88	Ta.5139.1.S1_at	BT009575.1	-	-	2e-1	At5g19740	peptidase M28 family protein	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.91	Ta.16216.1.S1_s_at	CA602710	-	-	4e+0	At3g51260	PAD1 (20s proteasome alpha subunit pad1)	O.I.	H.G.	S.X.	Please select
0.43	62.2	0.90	Ta.18704.1.S1_at	BT009605.1	-	-	3e-5	At5g53300	UBC10 (ubiquitin-conjugating enzyme 10)	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.90	Ta.30706.1.S1_at	AY543532.1	expansin EXPA6	-	8e+0	At2g03090	ATEXPA15 (ARABIDOPSIS THALIANA EXPANSIN A15)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
33.8	99.9	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
29.1	99.8	GSM314262	tissue type: seedling, root - rep3	GSE12508	Transcription patterns during wheat development
14.4	99.5	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
8.4	98.9	GSM314260	tissue type: seedling, root - rep1	GSE12508	Transcription patterns during wheat development
6.4	98.2	GSM138162	genotype E5 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
6.2	98.1	GSM314256	tissue type: germinating seed, root - rep3	GSE12508	Transcription patterns during wheat development
5.1	97.5	GSM314254	tissue type: germinating seed, root - rep1	GSE12508	Transcription patterns during wheat development
4.6	97.0	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
4.6	97.0	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.5	96.9	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.204498.1.S1_at, orthologous to the query gene, Ta.9132.3.S1_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.93	99.5	PtpAffx.204498.1.S1_at	At5g19740	SAUR family protein	-	3e+0	At5g12840	NF-YA1 (NUCLEAR FACTOR Y, SUBUNIT A1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.43	69.7	PtpAffx.115584.1.S1_at	At5g19740	hypothetical protein	-	1e-6	At1g58725	GDSL-motif lipase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	Ptp.2172.1.S1_at	At5g19740	hypothetical protein	-	1e-98	At1g58290	HEMA1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	PtpAffx.28620.1.S1_at	At5g19740	hypothetical protein	-	8e-18	At2g03090	ATEXPA15 (ARABIDOPSIS THALIANA EXPANSIN A15)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.10	16.3	Ptp.5242.3.S1_s_at	At5g19740	light-harvesting complex II protein Lhcb6	-	5e-25	At1g15820	LHCB6 (LIGHT HARVESTING COMPLEX PSII SUBUNIT 6)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.10	16.3	Ptp.5242.1.S1_s_at	At5g19740	light-harvesting complex II protein Lhcb6	-	6e-19	At1g15820	LHCB6 (LIGHT HARVESTING COMPLEX PSII SUBUNIT 6)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.08	12.9	PtpAffx.7804.3.A1_a_at	At5g19740	hypothetical protein	-	4e-1	At2g28755	UDP-D-glucuronate carboxy-lyase-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.03	5.2	Ptp.3170.1.S1_at	At5g19740	hypothetical protein	-	7e-12	At5g36120	CCB3 (COFACTOR ASSEMBLY, COMPLEX C (B6F),)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Vitis_vinifera

Zea_mays

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