Co-expression analysis

Gene ID	Ta.9131.3.S1_x_at
Gene name
Homology with Arabidopsis	Similar to At2g04395: DNA binding (HF=7e-2)
Module size	9 genes
NF	0.19
%ile	33.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.56	78.6	0.94	Ta.9131.3.S1_x_at	CA661837	-	-	7e-2	At2g04395	DNA binding	O.I.	H.G.	S.X.	Please select
0.43	62.2	0.95	Ta.6444.2.S1_a_at	CA681957	-	-	3e-4	At3g17000	UBC32 (ubiquitin-conjugating enzyme 32)	O.I.	H.G.	S.X.	Please select
0.25	32.1	0.96	Ta.7861.2.S1_a_at	CA692192	-	-	9e-1	At4g19640	ARA7	O.I.	H.G.	S.X.	Please select
0.22	27.1	0.96	TaAffx.49165.1.S1_x_at	CA640875	-	-	2e+0	At1g80340	GA3OX2 (GIBBERELLIN 3-OXIDASE 2)	O.I.	H.G.	S.X.	Please select
0.21	25.5	0.96	TaAffx.14645.1.S1_at	CA737282	-	-	2e+0	At3g32100	unknown protein	O.I.	H.G.	S.X.	Please select
0.19	22.4	0.95	TaAffx.83463.1.S1_at	CA697862	-	-	1e+0	At4g36620	zinc finger (GATA type) family protein	O.I.	H.G.	S.X.	Please select
0.16	18.2	0.96	TaAffx.9323.1.S1_at	CA602698	-	-	4e+0	At1g70890	MLP43 (MLP-LIKE PROTEIN 43)	O.I.	H.G.	S.X.	Please select
0.15	17.1	0.95	TaAffx.12136.3.S1_at	CA641613	-	-	2e-23	At3g22750	protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.08	9.4	0.96	AFFX-Tae-r2-Bs-thr-M_s_at	AFFX-Tae-r2-Bs-thr-M	-	-			-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.4	98.9	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
4.7	97.1	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.6	95.6	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.6	95.6	GSM143521	Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.5	95.4	GSM143513	Thatcher_Lr34 (resistant), mock inoculated distal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.4	95.2	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.2	94.8	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.2	94.8	GSM143524	Thatcher_Lr34 (susceptible), mock inoculated distal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.1	94.5	GSM143517	Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.0	94.3	GSM143522	Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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