Co-expression analysis

Gene ID	Ta.9075.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g22910: RNA recognition motif (RRM)-containing protein (HF=6e-15)
Module size	6 genes
NF	0.24
%ile	40.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	79.8	0.93	Ta.9075.1.S1_at	BQ170302	-	-	6e-15	At1g22910	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.93	TaAffx.56375.1.A1_at	BJ238027	-	-	1e+0	At4g00467	-	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.93	Ta.7152.2.S1_at	CD894757	-	-	1e-12	At5g54670	ATK3 (ARABIDOPSIS THALIANA KINESIN 3)	O.I.	H.G.	S.X.	Please select
0.22	27.1	0.93	TaAffx.106349.1.S1_at	CA723811	-	-	1e+0	At1g67080	ABA4 (abscisic acid (ABA)-deficient 4)	O.I.	H.G.	S.X.	Please select
0.13	14.6	0.94	Ta.7152.1.A1_at	CA498144	-	-	2e+1	At5g04840	bZIP protein	O.I.	H.G.	S.X.	Please select
0.08	9.4	0.93	Ta.3354.1.S1_x_at	BJ210754	-	-	1e+0	At2g47710	universal stress protein (USP) family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.5	98.9	GSM139927	Anther tetrads rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
7.8	98.7	GSM139925	Anther tetrads rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
6.0	98.0	GSM314270	tissue type: immature inflorescence - rep2	GSE12508	Transcription patterns during wheat development
5.0	97.4	GSM314271	tissue type: immature inflorescence - rep3	GSE12508	Transcription patterns during wheat development
5.0	97.4	GSM314269	tissue type: immature inflorescence - rep1	GSE12508	Transcription patterns during wheat development
3.9	96.1	GSM298087	Crown tissue of Solstice at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.6	95.6	GSM298075	Crown tissue of Paragon at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.6	95.6	GSM139914	Anther pre-meiosis rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.5	95.4	GSM298076	Crown tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.5	95.4	GSM298072	Crown tissue of Paragon at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

A co-expression module including the poplar gene, Ptp.6298.1.S1_at, orthologous to the query gene, Ta.9075.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.56	83.9	Ptp.6298.1.S1_at	At1g22910	hypothetical protein	-	3e-26	At1g22910	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	Ptp.7380.1.S1_s_at	At1g22910	hypothetical protein	-	7e-68	At2g30710	RabGAP/TBC domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	PtpAffx.204463.1.S1_at	At1g22910	hypothetical protein	-	0	At5g22780	adaptin family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.201241.1.S1_s_at	At1g22910	hypothetical protein	-	2e-13	At1g50730	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.117024.1.S1_s_at	At1g22910	hypothetical protein	-	7e-77	At4g11380	beta-adaptin, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.24	41.8	PtpAffx.201242.1.S1_at	At1g22910	hypothetical protein	-	3e-5	At1g50730	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Vitis_vinifera

Zea_mays

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