Co-expression analysis

Gene ID	Ta.906.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g16180: TMS membrane family protein / tumour differentially expressed (TDE) family protein (HF=3e-22)
Module size	7 genes
NF	0.67
%ile	91.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	83.1	0.97	Ta.906.1.S1_at	CK195658	-	-	3e-22	At1g16180	TMS membrane family protein / tumour differentially expressed (TDE) family protein	O.I.	H.G.	S.X.	Please select
0.71	88.0	0.98	Ta.28553.13.S1_x_at	BJ300199	-	-	5e-138	At4g05320	UBQ10 (POLYUBIQUITIN 10)	O.I.	H.G.	S.X.	Please select
0.71	88.0	0.98	Ta.28553.13.S1_at	BJ300199	-	-	5e-138	At4g05320	UBQ10 (POLYUBIQUITIN 10)	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.98	Ta.28553.14.A1_x_at	BJ273013	-	-	1e-70	At4g02890	UBQ14	O.I.	H.G.	S.X.	Please select
0.60	81.0	0.98	Ta.28553.10.S1_at	BJ264471	-	-	3e-67	At4g02890	UBQ14	O.I.	H.G.	S.X.	Please select
0.56	78.6	0.98	Ta.28553.12.S1_x_at	BJ242344	Polyubiquitin	-	9e-164	At4g02890	UBQ14	O.I.	H.G.	S.X.	Please select
0.56	78.6	0.98	Ta.1709.1.S1_x_at	CK208738	-	-	2e-53	At2g27600	SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.8	97.2	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.3	95.0	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.2	94.8	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.8	93.6	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.6	92.9	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.3	91.5	GSM111184	genotype C22 developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
1.9	88.9	GSM298063	Crown tissue of Harnesk at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
1.7	87.1	GSM139926	Anther tetrads rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
1.7	87.1	GSM138171	genotype C31 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
1.7	87.1	GSM138193	genotype B33 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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