Co-expression analysis

Gene ID Ta.9011.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At4g31320: auxin-responsive protein, putative / small auxin up RNA (SAUR_C) (HF=4e+0)
Module size 26 genes
NF 0.55
%ile 81.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8192.40.82Ta.9011.1.S1_atBQ162767--4e+0At4g31320auxin-responsive protein, putative / small auxin up RNA (SAUR_C)O.I.H.G.S.X.
0.7690.10.88Ta.22191.1.S1_atCD453799--4e-1At3g53120VPS37-1O.I.H.G.S.X.
0.7188.00.92Ta.9626.1.A1_atBJ218177--4e+0At3g60020ASK5 (ARABIDOPSIS SKP1-LIKE 5)O.I.H.G.S.X.
0.7087.20.89TaAffx.128418.94.S1_atCA631260--4e+0At5g60460sec61beta family proteinO.I.H.G.S.X.
0.6886.50.91Ta.6810.1.S1_a_atCD492006--6e-1At5g60360AALP (Arabidopsis aleurain-like protease)O.I.H.G.S.X.
0.6886.50.91Ta.19599.1.S1_atCA653901--8e-1At1g02130ARA-5 (ARABIDOPSIS RAS 5)O.I.H.G.S.X.
0.6786.30.87Ta.7073.1.S1_atBJ314861--1e+0At1g04760ATVAMP726O.I.H.G.S.X.
0.6684.10.89Ta.6810.1.S1_atCD492006--6e-1At5g60360AALP (Arabidopsis aleurain-like protease)O.I.H.G.S.X.
0.6583.90.91Ta.13535.1.S1_atBE444975--1e+1At5g19151unknown proteinO.I.H.G.S.X.
0.6383.10.92Ta.3628.1.S1_x_atCF133144--2e+0At1g73510unknown proteinO.I.H.G.S.X.
0.5979.80.92TaAffx.70418.1.S1_atBQ802731--3e+1At5g53040RWP-RK domain-containing proteinO.I.H.G.S.X.
0.5879.20.91Ta.3628.2.S1_x_atCA645835--2e+0At1g73510unknown proteinO.I.H.G.S.X.
0.5879.20.92Ta.3628.1.S1_a_atCF133144--2e+0At1g73510unknown proteinO.I.H.G.S.X.
0.5779.20.89Ta.3628.3.S1_x_atCA637845--4e+0At5g12840NF-YA1 (NUCLEAR FACTOR Y, SUBUNIT A1)O.I.H.G.S.X.
0.5678.60.90Ta.7279.1.S1_atCK152216--1e+1At2g47400CP12-1O.I.H.G.S.X.
0.5576.80.91Ta.3628.1.S1_atCF133144--2e+0At1g73510unknown proteinO.I.H.G.S.X.
0.5576.80.92TaAffx.1270.1.S1_atCK208291--9e-3At5g55750hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.5173.00.86TaAffx.110970.1.S1_atCA650601--1e+1At4g31240-O.I.H.G.S.X.
0.4565.20.88Ta.10607.2.S1_a_atBQ166098--7e+0At3g50440MES10 (METHYL ESTERASE 10)O.I.H.G.S.X.
0.4362.20.88Ta.6292.1.S1_x_atCD454582calcium-dependent protein kinase-9e-20At3g51850CPK13O.I.H.G.S.X.
0.4159.60.88Ta.6292.1.S1_a_atCD454582calcium-dependent protein kinase-9e-20At3g51850CPK13O.I.H.G.S.X.
0.4058.40.84Ta.24636.1.S1_atCD867959--3e-1At1g20850XCP2 (xylem cysteine peptidase 2)O.I.H.G.S.X.
0.4058.40.86Ta.2975.1.S1_atBJ221404--8e+0At4g02655unknown proteinO.I.H.G.S.X.
0.3956.10.88Ta.16220.1.S1_atCA602811--1e+1At5g43380TOPP6O.I.H.G.S.X.
0.3854.70.92Ta.21197.1.A1_atCA603590--1e+1At3g02910-O.I.H.G.S.X.
0.2939.20.88Ta.14482.1.S1_atBJ214882--2e-16At1g10200WLIM1O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.199.0GSM298072Crown tissue of Paragon at 3 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
7.798.7GSM298071Crown tissue of Paragon at 3 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
6.298.1GSM298076Crown tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
6.198.1GSM298073Crown tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
6.198.1GSM298075Crown tissue of Paragon at 9 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
6.198.1GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.998.0GSM298074Crown tissue of Paragon at 5 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.497.7GSM315203target strand labeled: Antisense - rep1GSE12528Wheat "Chinese Spring" natural antisense transcription surveyLink to GEO
5.197.5GSM298062Crown tissue of Harnesk at 5 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.097.4GSM298059Crown tissue of Harnesk at 3 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage