Co-expression analysis

Gene ID	Ta.8960.2.S1_a_at
Gene name
Homology with Arabidopsis	Similar to At5g15850: COL1 (constans-like 1) (HF=3e-1)
Module size	13 genes
NF	0.29
%ile	48.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.62	82.3	0.95	Ta.8960.2.S1_a_at	CA637858	-	-	3e-1	At5g15850	COL1 (constans-like 1)	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.97	Ta.21119.2.S1_at	CA647503	-	-	4e-3	At2g47970	NPL4 family protein	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.96	Ta.11178.3.S1_a_at	CA653642	-	-	1e-9	At5g15440	EDL1 (EID1-like 1)	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.97	Ta.6161.3.S1_a_at	CA640525	-	-	1e-12	At5g50870	UBC27 (ubiquitin-conjugating enzyme 27)	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.96	Ta.21119.3.S1_x_at	CA613082	-	-	1e-3	At3g63000	NPL41 (NPL4-LIKE PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.32	44.4	0.96	TaAffx.119743.1.S1_at	BJ260096	-	-	5e-1	At2g25625	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	44.4	0.97	Ta.6161.3.S1_x_at	CA640525	-	-	1e-12	At5g50870	UBC27 (ubiquitin-conjugating enzyme 27)	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.96	TaAffx.119743.1.S1_s_at	BJ260096	-	-	5e-1	At2g25625	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.98	Ta.21119.1.S1_at	CD915118	-	-	3e-3	At3g63000	NPL41 (NPL4-LIKE PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.23	29.0	0.96	Ta.10250.3.S1_at	CA695383	-	-	1e-7	At3g51390	zinc finger (DHHC type) family protein	O.I.	H.G.	S.X.	Please select
0.19	22.4	0.96	TaAffx.119099.1.S1_at	CA641891	-	-	5e-1	At3g13662	-	O.I.	H.G.	S.X.	Please select
0.19	22.4	0.96	Ta.27110.1.S1_x_at	BJ238162	-	-	4e-11	At2g32720	CB5-B (CYTOCHROME B5 ISOFORM B)	O.I.	H.G.	S.X.	Please select
0.16	18.2	0.96	Ta.3505.1.S1_x_at	CD899942	-	-	8e-8	At4g28300	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.0	94.3	GSM314260	tissue type: seedling, root - rep1	GSE12508	Transcription patterns during wheat development
2.3	91.5	GSM314256	tissue type: germinating seed, root - rep3	GSE12508	Transcription patterns during wheat development
2.2	91.0	GSM314259	tissue type: germinating seed, embryo - rep3	GSE12508	Transcription patterns during wheat development
2.2	91.0	GSM138145	Genotype RL4452 developing seed at 5 days after anthesis, biological rep3 location SB	GSE5937	Wheat expression level polymorphism study parental genotypes 2 biological reps from SB location
2.2	91.0	GSM111232	genotype H8 developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
2.2	91.0	GSM138160	genotype A91 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.1	90.3	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
2.1	90.3	GSM314257	tissue type: germinating seed, embryo - rep1	GSE12508	Transcription patterns during wheat development
2.1	90.3	GSM314258	tissue type: germinating seed, embryo - rep2	GSE12508	Transcription patterns during wheat development
2.0	89.7	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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