Co-expression analysis

Gene ID	Ta.8836.2.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g22040: kelch repeat-containing F-box family protein (HF=1e-3)
Module size	13 genes
NF	0.22
%ile	36.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	93.4	0.93	Ta.8836.2.S1_at	BJ246543	-	-	1e-3	At1g22040	kelch repeat-containing F-box family protein	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.95	Ta.28201.1.S1_at	CD868555	-	-	4e-1	At2g14835	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.97	Ta.27228.1.S1_at	BT009236.1	-	-	5e-2	At2g15390	FUT4	O.I.	H.G.	S.X.	Please select
0.25	32.1	0.95	Ta.19832.1.A1_at	CA657311	-	-	9e-11	At1g63340	FAD binding / NADP or NADPH binding / electron carrier/ flavin-containing monooxygenase/ monooxygenase	O.I.	H.G.	S.X.	Please select
0.22	27.1	0.95	Ta.510.2.S1_at	CK209093	-	-	1e-11	At5g54110	ATMAMI (ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED MANNITOL-INDUCED)	O.I.	H.G.	S.X.	Please select
0.22	27.1	0.95	TaAffx.3441.1.S1_at	CA689765	-	-	6e-1	At5g60910	AGL8 (agamous-like 8)	O.I.	H.G.	S.X.	Please select
0.21	25.5	0.95	Ta.4367.1.S1_at	AF438359.1	thioredoxin	-	4e-2	At4g33320	unknown protein	O.I.	H.G.	S.X.	Please select
0.18	21.0	0.96	Ta.7925.2.S1_a_at	BQ160949	-	-	2e-5	At3g13550	FUS9 (FUSCA 9)	O.I.	H.G.	S.X.	Please select
0.17	19.8	0.94	TaAffx.3722.1.S1_at	CA685523	-	-	3e-29	At3g11670	DGD1 (DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1)	O.I.	H.G.	S.X.	Please select
0.17	19.8	0.94	TaAffx.28555.1.S1_s_at	CA658793	-	-	2e+1	At5g50423	-	O.I.	H.G.	S.X.	Please select
0.14	15.8	0.96	Ta.4417.1.S1_x_at	CD880116	-	-	4e-1	At3g53470	unknown protein	O.I.	H.G.	S.X.	Please select
0.14	15.8	0.96	Ta.9156.2.A1_a_at	CD870512	aspartic proteinase	-	1e-1	At1g11910	aspartyl protease family protein	O.I.	H.G.	S.X.	Please select
0.12	13.3	0.93	Ta.12671.1.S1_a_at	CK194385	-	-	3e+1	At5g59970	histone H4	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.1	96.4	GSM314273	tissue type: floral bracts, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
3.7	95.8	GSM324485	Si- B- rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
3.4	95.2	GSM324486	Si- B- rep3	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
3.2	94.8	GSM314274	tissue type: floral bracts, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
3.2	94.8	GSM314272	tissue type: floral bracts, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
2.8	93.6	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.6	92.9	GSM139917	Anther leptotene-pachytene rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.6	92.9	GSM324491	Si+ B- rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
2.5	92.5	GSM298069	Leaf tissue of Paragon at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
2.5	92.5	GSM324490	Si+ B- rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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