Co-expression analysis

Gene ID	Ta.8762.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At5g35920: CYP79A4P (HF=4e+0)
Module size	6 genes
NF	0.10
%ile	21.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.48	69.0	0.75	Ta.8762.1.A1_at	BQ162341	-	-	4e+0	At5g35920	CYP79A4P	O.I.	H.G.	S.X.	Please select
0.55	76.8	0.82	TaAffx.108166.1.S1_at	CA691086	-	-	2e+1	At4g26420	GAMT1	O.I.	H.G.	S.X.	Please select
0.46	66.8	0.79	Ta.12180.1.S1_at	AJ604265	-	-	6e+0	At2g39415	F-box family protein	O.I.	H.G.	S.X.	Please select
0.17	19.8	0.84	TaAffx.110410.1.S1_at	CA708332	-	-	1e+0	At2g05380	GRP3S (GLYCINE-RICH PROTEIN 3 SHORT ISOFORM)	O.I.	H.G.	S.X.	Please select
0.07	8.6	0.84	TaAffx.82099.1.S1_at	CA677587	-	-	9e-1	At3g26800	unknown protein	O.I.	H.G.	S.X.	Please select
0.02	3.6	0.86	Ta.18003.1.S1_at	CA627152	-	-	5e-1	At1g04130	tetratricopeptide repeat (TPR)-containing protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.8	99.1	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.7	98.7	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.7	97.1	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.4	96.8	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.7	95.8	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.2	94.8	GSM298085	Crown tissue of Solstice at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.1	94.5	GSM324488	Si- B+ rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
3.0	94.3	GSM314277	tissue type: pistil, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
2.9	94.0	GSM139931	Anther maturea nthers rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.9	94.0	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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