Co-expression analysis

Gene ID	Ta.8643.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At2g22807: - (HF=5e-2)
Module size	14 genes
NF	0.34
%ile	54.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.96	99.3	0.88	Ta.8643.1.S1_at	CA610845	-	-	5e-2	At2g22807	-	O.I.	H.G.	S.X.	Please select
0.70	87.2	0.93	Ta.1610.1.A1_at	BE443061	-	-	9e+0	At5g44270	-	O.I.	H.G.	S.X.	Please select
0.57	79.2	0.96	Ta.1795.1.A1_at	BE445285	-	-	7e-2	At3g30180	BR6OX2 (BRASSINOSTEROID-6-OXIDASE 2)	O.I.	H.G.	S.X.	Please select
0.54	75.5	0.91	Ta.116.1.S1_at	BE404653	cla30 protein	-	1e-4	At2g36460	fructose-bisphosphate aldolase, putative	O.I.	H.G.	S.X.	Please select
0.51	73.0	0.94	Ta.16592.1.S1_at	CA609230	-	-	4e+0	At1g09660	KH domain-containing quaking protein, putative	O.I.	H.G.	S.X.	Please select
0.46	66.8	0.91	TaAffx.32029.1.S1_at	CA602639	-	-	4e+0	At2g03640	nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.93	Ta.14132.1.S1_x_at	BQ803864	-	-	5e-3	At5g54500	FQR1 (FLAVODOXIN-LIKE QUINONE REDUCTASE 1)	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.95	Ta.18283.2.S1_x_at	CA607852	-	-	2e+1	At1g62510	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.32	44.4	0.95	Ta.5135.1.S1_at	BJ277412	-	-	3e-1	At5g48190	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	29.0	0.91	Ta.26120.1.S1_x_at	CD452817	-	-	2e+1	At5g59720	HSP18.2 (heat shock protein 18.2)	O.I.	H.G.	S.X.	Please select
0.21	25.5	0.90	Ta.21031.1.S1_at	AY543530.1	-	-	4e-5	At2g39700	ATEXPA4 (ARABIDOPSIS THALIANA EXPANSIN A4)	O.I.	H.G.	S.X.	Please select
0.20	24.0	0.96	TaAffx.113829.1.S1_at	CA604276	-	-	2e+0	At5g26848	unknown protein	O.I.	H.G.	S.X.	Please select
0.18	21.0	0.96	TaAffx.84302.1.S1_at	CA648505	-	-	3e-1	At4g15360	CYP705A3	O.I.	H.G.	S.X.	Please select
0.13	14.6	0.94	Ta.18958.1.S1_at	CA644817	-	-	8e-1	At4g10115	SCRL20 (SCR-Like 20)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
16.3	99.6	GSM314256	tissue type: germinating seed, root - rep3	GSE12508	Transcription patterns during wheat development
9.2	99.0	GSM314255	tissue type: germinating seed, root - rep2	GSE12508	Transcription patterns during wheat development
7.1	98.5	GSM314254	tissue type: germinating seed, root - rep1	GSE12508	Transcription patterns during wheat development
6.7	98.4	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
6.1	98.1	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
5.3	97.6	GSM314262	tissue type: seedling, root - rep3	GSE12508	Transcription patterns during wheat development
4.7	97.1	GSM314260	tissue type: seedling, root - rep1	GSE12508	Transcription patterns during wheat development
4.0	96.3	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.4	95.2	GSM314259	tissue type: germinating seed, embryo - rep3	GSE12508	Transcription patterns during wheat development
3.2	94.8	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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