Co-expression analysis

Gene ID	Ta.8495.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At5g66350: SHI (SHORT INTERNODES) (HF=8e-4)
Module size	6 genes
NF	0.77
%ile	95.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	76.8	0.96	Ta.8495.1.A1_at	BJ250503	-	-	8e-4	At5g66350	SHI (SHORT INTERNODES)	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.96	TaAffx.107507.2.S1_s_at	CA694102	-	-	4e+0	At5g42750	BKI1 (BRI1 kinase inhibitor 1)	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.96	TaAffx.107507.1.S1_at	CA690543	-	-	3e+0	At5g25410	unknown protein	O.I.	H.G.	S.X.	Please select
0.73	89.1	0.96	Ta.14904.1.S1_at	CA683605	-	-	6e+0	At3g56710	SIB1 (SIGMA FACTOR BINDING PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.71	88.0	0.96	TaAffx.107979.1.S1_at	CA692409	-	-	3e-1	At2g35420	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.96	Ta.8418.1.S1_at	BQ161870	-	-	9e+0	At3g52350	D111/G-patch domain-containing protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
24.9	99.8	GSM324488	Si- B+ rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
9.6	99.1	GSM324487	Si- B+ rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
7.7	98.7	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.7	97.9	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
5.1	97.5	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.1	97.5	GSM324489	Si- B+ rep3	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
3.8	96.0	GSM111217	genotype D15 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.7	95.8	GSM143518	Thatcher_Lr34 (susceptible), rust inoculated distal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.7	95.8	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
3.7	95.8	GSM143506	Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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