Co-expression analysis

Gene ID	Ta.8457.2.A1_at
Gene name
Homology with Arabidopsis	Similar to At4g00220: JLO (JAGGED LATERAL ORGANS) (HF=1e+1)
Module size	6 genes
NF	0.68
%ile	91.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	90.8	0.97	Ta.8457.2.A1_at	BQ161925	-	-	1e+1	At4g00220	JLO (JAGGED LATERAL ORGANS)	O.I.	H.G.	S.X.	Please select
0.80	92.2	0.97	Ta.27783.1.S1_at	BQ237765	-	-	2e-19	At4g15415	ATB' GAMMA	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.97	Ta.8457.1.A1_at	BE430699	-	-	6e+0	At2g20619	-	O.I.	H.G.	S.X.	Please select
0.55	76.8	0.97	TaAffx.11930.1.S1_s_at	CA639901	-	-	3e-5	At2g30330	GCN5L1 family protein	O.I.	H.G.	S.X.	Please select
0.53	74.9	0.97	Ta.3348.1.S1_a_at	BJ314622	-	-	3e-52	At1g14400	UBC1 (UBIQUITIN CARRIER PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.97	Ta.9207.1.S1_at	CK212610	-	-	1e-8	At1g79590	SYP52 (SYNTAXIN OF PLANTS 52)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
27.4	99.8	GSM139928	Anther immature pollen rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
23.2	99.8	GSM139930	Anther immature pollen rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
11.6	99.3	GSM139926	Anther tetrads rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
11.1	99.3	GSM314258	tissue type: germinating seed, embryo - rep2	GSE12508	Transcription patterns during wheat development
10.3	99.2	GSM314278	tissue type: anthers, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
9.7	99.1	GSM314286	tissue type: 22 DAP embryo - rep3	GSE12508	Transcription patterns during wheat development
9.1	99.0	GSM314263	tissue type: seedling, crown - rep1	GSE12508	Transcription patterns during wheat development
9.0	99.0	GSM314280	tissue type: anthers, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
7.4	98.6	GSM314285	tissue type: 22 DAP embryo - rep2	GSE12508	Transcription patterns during wheat development
7.3	98.6	GSM314257	tissue type: germinating seed, embryo - rep1	GSE12508	Transcription patterns during wheat development

Inter-species module comparison

A co-expression module including the grape gene, 1612266_at, orthologous to the query gene, Ta.8457.2.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.72	89.7	1612266_at	At4g00220	-	-	3e-1	At1g71840	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.47	67.7	1616520_at	At4g00220	hypothetical protein LOC100258184	-	2e-37	At4g09320	NDPK1	O.I.	H.G.	S.X.	Please select
0.44	64.1	1607741_a_at	At4g00220	hypothetical protein LOC100244681	-	4e-3	At1g79975	-	O.I.	H.G.	S.X.	Please select
0.44	64.1	1612832_at	At4g00220	hypothetical protein LOC100258382	-	7e-3	At3g27100	-	O.I.	H.G.	S.X.	Please select
0.42	60.1	1621845_s_at	At4g00220	hypothetical protein LOC100261121	-	1e-13	At4g29350	PFN2 (PROFILIN 2)	O.I.	H.G.	S.X.	Please select
0.37	51.7	1621023_at	At4g00220	hypothetical protein LOC100258618	-	8e-27	At5g59140	SKP1 family protein	O.I.	H.G.	S.X.	Please select
0.37	51.7	1620631_at	At4g00220	hypothetical protein LOC100255601	-	1e-63	At1g16700	NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial, putative	O.I.	H.G.	S.X.	Please select
0.36	50.7	1618248_at	At4g00220	hypothetical protein LOC100250810	-	1e-19	At5g20180	ribosomal protein L36 family protein	O.I.	H.G.	S.X.	Please select
0.35	48.5	1619551_at	At4g00220	hypothetical protein LOC100260697	-	9e-12	At4g08520	clathrin adaptor complex small chain family protein	O.I.	H.G.	S.X.	Please select
0.33	45.7	1614753_at	At4g00220	hypothetical protein LOC100241307	-	2e-4	At2g43090	aconitase C-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.31	41.3	1615018_at	At4g00220	hypothetical protein LOC100249252	-	2e-12	At5g52840	NADH-ubiquinone oxidoreductase-related	O.I.	H.G.	S.X.	Please select
0.29	37.7	1616873_at	At4g00220	hypothetical protein LOC100241265	-	2e-1	At4g21865	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Zea_mays

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