CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.8457.2.A1_at

Gene name
Homology with Arabidopsis Similar to At4g00220: JLO (JAGGED LATERAL ORGANS) (HF=1e+1)

Module size 6 genes

NF 0.68

%ile 91.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.77 90.8 0.97 Ta.8457.2.A1_at BQ161925 - - 1e+1 At4g00220 JLO (JAGGED LATERAL ORGANS) O.I. H.G. S.X.
0.80 92.2 0.97 Ta.27783.1.S1_at BQ237765 - - 2e-19 At4g15415 ATB' GAMMA O.I. H.G. S.X.
0.67 86.3 0.97 Ta.8457.1.A1_at BE430699 - - 6e+0 At2g20619 - O.I. H.G. S.X.
0.55 76.8 0.97 TaAffx.11930.1.S1_s_at CA639901 - - 3e-5 At2g30330 GCN5L1 family protein O.I. H.G. S.X.
0.53 74.9 0.97 Ta.3348.1.S1_a_at BJ314622 - - 3e-52 At1g14400 UBC1 (UBIQUITIN CARRIER PROTEIN 1) O.I. H.G. S.X.
0.40 58.4 0.97 Ta.9207.1.S1_at CK212610 - - 1e-8 At1g79590 SYP52 (SYNTAXIN OF PLANTS 52) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
27.4 99.8 GSM139928 Anther immature pollen rep1 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
23.2 99.8 GSM139930 Anther immature pollen rep3 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
11.6 99.3 GSM139926 Anther tetrads rep2 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
11.1 99.3 GSM314258 tissue type: germinating seed, embryo - rep2 GSE12508 Transcription patterns during wheat development
10.3 99.2 GSM314278 tissue type: anthers, before anthesis - rep1 GSE12508 Transcription patterns during wheat development
9.7 99.1 GSM314286 tissue type: 22 DAP embryo - rep3 GSE12508 Transcription patterns during wheat development
9.1 99.0 GSM314263 tissue type: seedling, crown - rep1 GSE12508 Transcription patterns during wheat development
9.0 99.0 GSM314280 tissue type: anthers, before anthesis - rep3 GSE12508 Transcription patterns during wheat development
7.4 98.6 GSM314285 tissue type: 22 DAP embryo - rep2 GSE12508 Transcription patterns during wheat development
7.3 98.6 GSM314257 tissue type: germinating seed, embryo - rep1 GSE12508 Transcription patterns during wheat development

Inter-species module comparison

A co-expression module including the rice gene, Os11g0127700, orthologous to the query gene, Ta.8457.2.A1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 Os11g0127700 At4g00220 - Hypothetical protein 2e-1 At1g49480 RTV1 (related to vernalization1 1) O.I. H.G. S.X.
0.80 94.6 Os12g0123900 At4g00220 - Hypothetical protein 3e+0 At5g27690 heavy-metal-associated domain-containing protein O.I. H.G. S.X.
0.67 87.2 Os06g0662000 At4g00220 - Vacuolar ATP synthase catalytic subunit A (EC3.6.3.14) (V-ATPase A subunit) (Vacuolar proton pumpalpha subunit) (V-ATPase 69 kDa subunit) 0 At1g78900 VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A) O.I. H.G. S.X.
0.67 87.2 Os10g0184300 At4g00220 - Hypothetical protein 1e-28 At4g39080 VHA-A3 (VACUOLAR PROTON ATPASE A3) O.I. H.G. S.X.
0.46 60.9 Os11g0169900 At4g00220 - Vacuolar ATP synthase 16 kDa proteolipid subunit(EC 3.6.3.14) (V- ATPase 16 kDa proteolipid subunit)(Fragment) 4e-63 At1g75630 AVA-P4 O.I. H.G. S.X.
0.44 58.1 Os06g0568200 At4g00220 - Vacuolar ATPase B subunit 4e-111 At1g20260 hydrogen ion transporting ATP synthase, rotational mechanism / hydrolase, acting on acid anhydrides, catalyzing transmembrane movement of substances / proton-transporting ATPase, rotational mechanism O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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