Co-expression analysis

Gene ID Ta.8457.2.A1_at
Gene name
Homology with ArabidopsisSimilar to At4g00220: JLO (JAGGED LATERAL ORGANS) (HF=1e+1)
Module size 6 genes
NF 0.68
%ile 91.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7790.80.97Ta.8457.2.A1_atBQ161925--1e+1At4g00220JLO (JAGGED LATERAL ORGANS)O.I.H.G.S.X.
0.8092.20.97Ta.27783.1.S1_atBQ237765--2e-19At4g15415ATB' GAMMAO.I.H.G.S.X.
0.6786.30.97Ta.8457.1.A1_atBE430699--6e+0At2g20619-O.I.H.G.S.X.
0.5576.80.97TaAffx.11930.1.S1_s_atCA639901--3e-5At2g30330GCN5L1 family proteinO.I.H.G.S.X.
0.5374.90.97Ta.3348.1.S1_a_atBJ314622--3e-52At1g14400UBC1 (UBIQUITIN CARRIER PROTEIN 1)O.I.H.G.S.X.
0.4058.40.97Ta.9207.1.S1_atCK212610--1e-8At1g79590SYP52 (SYNTAXIN OF PLANTS 52)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
27.499.8GSM139928Anther immature pollen rep1GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
23.299.8GSM139930Anther immature pollen rep3GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
11.699.3GSM139926Anther tetrads rep2GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
11.199.3GSM314258tissue type: germinating seed, embryo - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
10.399.2GSM314278tissue type: anthers, before anthesis - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
9.799.1GSM314286tissue type: 22 DAP embryo - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
9.199.0GSM314263tissue type: seedling, crown - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
9.099.0GSM314280tissue type: anthers, before anthesis - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
7.498.6GSM314285tissue type: 22 DAP embryo - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
7.398.6GSM314257tissue type: germinating seed, embryo - rep1GSE12508Transcription patterns during wheat developmentLink to GEO

Inter-species module comparison

A co-expression module including the soybean gene, HgAffx.4083.1.A1_at, orthologous to the query gene, Ta.8457.2.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9198.6HgAffx.4083.1.A1_atAt4g00220--9e+0At5g38360catalyticO.I.H.G.S.X.
0.6080.7GmaAffx.89861.1.S1_s_atAt4g00220Ubiquitin-3e-127At4g05320UBQ10 (POLYUBIQUITIN 10)O.I.H.G.S.X.
0.5576.3Gma.2534.1.S1_s_atAt4g00220Ubiquitin-2e-140At4g05320UBQ10 (POLYUBIQUITIN 10)O.I.H.G.S.X.
0.3243.7Gma.2534.2.S1_s_atAt4g00220--2e-76At4g02890UBQ14O.I.H.G.S.X.
0.2939.0GmaAffx.99.2.A1_s_atAt4g00220Translationally controlled tumor-like protein-3e-1At3g26670-O.I.H.G.S.X.
0.1721.2GmaAffx.88908.1.A1_x_atAt4g00220--2e-28At5g59880ADF3 (ACTIN DEPOLYMERIZING FACTOR 3)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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