Co-expression analysis

Gene ID	Ta.8457.1.A1_x_at
Gene name
Homology with Arabidopsis	Similar to At2g20619: - (HF=6e+0)
Module size	8 genes
NF	0.18
%ile	32.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.70	87.2	0.95	Ta.8457.1.A1_x_at	BE430699	-	-	6e+0	At2g20619	-	O.I.	H.G.	S.X.	Please select
0.57	79.2	0.96	Ta.12360.1.A1_at	CA648024	-	-	4e+0	At1g70220	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	29.0	0.95	Ta.3203.2.S1_x_at	CA621738	-	-	5e-6	At1g27530	-	O.I.	H.G.	S.X.	Please select
0.19	22.4	0.95	TaAffx.51129.1.S1_at	CA730664	-	-	3e-1	At4g10970	unknown protein	O.I.	H.G.	S.X.	Please select
0.13	14.6	0.95	Ta.3054.1.A1_s_at	BJ231428	-	-	3e-1	At2g28930	APK1B	O.I.	H.G.	S.X.	Please select
0.12	13.3	0.95	Ta.10821.1.S1_at	CA627799	-	-	1e-1	At3g61113	-	O.I.	H.G.	S.X.	Please select
0.11	12.4	0.96	Ta.16326.1.S1_at	BJ306642	-	-	1e+0	At5g23950	C2 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.10	11.3	0.95	Ta.2308.3.S1_x_at	CA683060	-	-	4e-3	At5g59140	SKP1 family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.2	99.5	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
7.0	98.5	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
6.6	98.3	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
5.4	97.7	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.2	97.5	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.8	96.0	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.5	95.4	GSM298090	Leaf tissue of Solstice at 5 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
3.4	95.2	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.2	94.8	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.0	94.3	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage