Co-expression analysis

Gene ID Ta.8433.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At2g06050: OPR3 (OPDA-REDUCTASE 3) (HF=2e-4)
Module size 8 genes
NF 0.23
%ile 39.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9398.70.96Ta.8433.1.S1_atCD873985--2e-4At2g06050OPR3 (OPDA-REDUCTASE 3)O.I.H.G.S.X.
0.5779.20.94Ta.8433.1.S1_x_atCD873985--2e-4At2g06050OPR3 (OPDA-REDUCTASE 3)O.I.H.G.S.X.
0.4260.90.95Ta.8433.2.S1_x_atCA645972--1e-3At2g06050OPR3 (OPDA-REDUCTASE 3)O.I.H.G.S.X.
0.2329.00.97Ta.6819.1.S1_atBJ323070--1e-5At1g63800UBC5 (ubiquitin-conjugating enzyme 5)O.I.H.G.S.X.
0.2329.00.98Ta.1474.1.S1_x_atCK167009--7e-28At3g52560UEV1D-4 (UBIQUITIN E2 VARIANT 1D-4)O.I.H.G.S.X.
0.1415.80.96Ta.20990.1.S1_a_atBJ286588--6e+0At4g33180hydrolase, alpha/beta fold family proteinO.I.H.G.S.X.
0.1314.60.97Ta.9302.1.S1_atCA604475--4e-2At4g13670PTAC5 (PLASTID TRANSCRIPTIONALLY ACTIVE5)O.I.H.G.S.X.
0.078.60.97Ta.8145.1.S1_atCD914485--1e-1At3g23330pentatricopeptide (PPR) repeat-containing proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.799.5GSM314261tissue type: seedling, root - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
12.699.4GSM314262tissue type: seedling, root - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
7.198.5GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.597.8GSM314256tissue type: germinating seed, root - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
4.797.1GSM298090Leaf tissue of Solstice at 5 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.697.0GSM314252tissue type: germinating seed, coleoptile - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
4.196.4GSM314260tissue type: seedling, root - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
4.096.3GSM298091Leaf tissue of Solstice at 9 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.896.0GSM298079Leaf tissue of Solstice at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.795.8GSM314254tissue type: germinating seed, root - rep1GSE12508Transcription patterns during wheat developmentLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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