Co-expression analysis

Gene ID	Ta.8431.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g03150: GCN5-related N-acetyltransferase (GNAT) family protein (HF=2e-12)
Module size	6 genes
NF	0.20
%ile	35.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	83.1	0.97	Ta.8431.1.S1_at	BQ161889	-	-	2e-12	At1g03150	GCN5-related N-acetyltransferase (GNAT) family protein	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.97	Ta.7569.1.S1_at	BJ308274	-	-	2e-17	At1g43190	polypyrimidine tract-binding protein, putative / heterogeneous nuclear ribonucleoprotein, putative	O.I.	H.G.	S.X.	Please select
0.32	44.4	0.97	Ta.22715.1.S1_s_at	CK159156	-	-	2e-16	At2g36130	peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative	O.I.	H.G.	S.X.	Please select
0.18	21.0	0.97	Ta.8819.2.S1_a_at	BJ296785	-	-	7e+0	At3g06280	-	O.I.	H.G.	S.X.	Please select
0.14	15.8	0.97	Ta.5442.1.S1_at	CK193982	-	-	2e-3	At2g47580	U1A (SPLICEOSOMAL PROTEIN U1A)	O.I.	H.G.	S.X.	Please select
0.08	9.4	0.97	Ta.9772.1.S1_x_at	CD866604	-	-	9e-3	At4g29430	rps15ae (ribosomal protein S15A E)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.1	98.8	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
7.3	98.6	GSM314262	tissue type: seedling, root - rep3	GSE12508	Transcription patterns during wheat development
6.0	98.0	GSM314260	tissue type: seedling, root - rep1	GSE12508	Transcription patterns during wheat development
4.1	96.4	GSM314254	tissue type: germinating seed, root - rep1	GSE12508	Transcription patterns during wheat development
3.9	96.1	GSM139914	Anther pre-meiosis rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.6	95.6	GSM139917	Anther leptotene-pachytene rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.4	95.2	GSM143521	Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.4	95.2	GSM139922	Anther telophaseI-telophaseII rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.2	94.8	GSM298059	Crown tissue of Harnesk at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.1	94.5	GSM139924	Anther telophaseI-telophaseII rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage