Co-expression analysis

Gene ID	Ta.8413.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At4g03960: tyrosine specific protein phosphatase family protein (HF=1e+0)
Module size	6 genes
NF	0.39
%ile	62.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	93.4	0.94	Ta.8413.1.A1_at	CA703631	-	-	1e+0	At4g03960	tyrosine specific protein phosphatase family protein	O.I.	H.G.	S.X.	Please select
0.55	76.8	0.95	Ta.29432.1.S1_at	BJ215997	-	-	1e-2	At1g05530	UGT75B2 (UDP-GLUCOSYL TRANSFERASE 75B2)	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.96	Ta.1382.1.S1_x_at	BQ237866	-	-	8e-23	At1g64650	-	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.95	Ta.28368.1.S1_x_at	CK206492	Type 1 non-specific lipid transfer protein precursor	-	8e+0	At5g63087	-	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.95	Ta.1382.3.S1_a_at	CA637786	-	-	3e-10	At4g27720	-	O.I.	H.G.	S.X.	Please select
0.19	22.4	0.95	Ta.1227.1.A1_at	BQ160869	-	-	2e+1	At1g47780	acyl-protein thioesterase-related	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.3	98.8	GSM298081	Leaf tissue of Solstice at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
6.5	98.3	GSM298082	Leaf tissue of Solstice at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.7	97.1	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.7	95.8	GSM139914	Anther pre-meiosis rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.6	95.6	GSM298057	Leaf tissue of Harnesk at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.6	95.6	GSM139929	Anther immature pollen rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.3	95.0	GSM143521	Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.3	95.0	GSM298076	Crown tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.2	94.8	GSM298058	Leaf tissue of Harnesk at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.1	94.5	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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