Co-expression analysis

Gene ID	Ta.8245.2.S1_x_at
Gene name
Homology with Arabidopsis	Similar to At5g13570: DCP2 (DECAPPING 2) (HF=4e+0)
Module size	19 genes
NF	0.55
%ile	81.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.95	99.1	0.90	Ta.8245.2.S1_x_at	CA680416	-	-	4e+0	At5g13570	DCP2 (DECAPPING 2)	O.I.	H.G.	S.X.	Please select
0.70	87.2	0.90	TaAffx.29314.1.S1_at	CA645755	-	-	1e+0	At5g10880	tRNA synthetase-related / tRNA ligase-related	O.I.	H.G.	S.X.	Please select
0.70	87.2	0.91	Ta.815.3.S1_s_at	CA677640	-	-	1e+0	At1g17400	unknown protein	O.I.	H.G.	S.X.	Please select
0.70	87.2	0.89	Ta.8245.2.S1_at	CA680416	-	-	4e+0	At5g13570	DCP2 (DECAPPING 2)	O.I.	H.G.	S.X.	Please select
0.65	83.9	0.90	TaAffx.53813.1.S1_at	CA688853	-	-	5e+0	At4g23432	unknown protein	O.I.	H.G.	S.X.	Please select
0.63	83.1	0.90	Ta.6467.3.A1_at	CA630700	-	-	4e+0	At5g67640	unknown protein	O.I.	H.G.	S.X.	Please select
0.63	83.1	0.91	Ta.22346.2.A1_at	CA741140	-	-	8e-1	At2g21560	unknown protein	O.I.	H.G.	S.X.	Please select
0.59	79.8	0.92	TaAffx.28148.1.S1_s_at	CA664492	-	-	4e+0	At4g03950	glucose-6-phosphate/phosphate translocator, putative	O.I.	H.G.	S.X.	Please select
0.59	79.8	0.91	TaAffx.51204.1.S1_at	CA729440	-	-	3e+0	At1g15850	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.58	79.2	0.90	TaAffx.113667.1.S1_at	CA607183	-	-	1e+0	At1g19130	-	O.I.	H.G.	S.X.	Please select
0.52	73.7	0.90	Ta.3416.3.S1_at	CA746230	-	-	3e+0	At5g52110	HCF208 (HIGH CHLOROPHYLL FLUORESCENCE 208)	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.89	Ta.30947.2.S1_at	CA735852	-	-	1e+0	At5g02530	RNA and export factor-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.49	69.7	0.89	Ta.2554.3.A1_at	CA726606	-	-	3e-1	At3g13672	seven in absentia (SINA) family protein	O.I.	H.G.	S.X.	Please select
0.45	65.2	0.90	Ta.14481.3.A1_at	CA656422	-	-	4e+0	At4g37500	xanthine dehydrogenase family protein	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.90	TaAffx.13378.1.S1_at	BG904817	-	-	8e-1	At3g19350	MPC (MATERNALLY EXPRESSED PAB C-TERMINAL)	O.I.	H.G.	S.X.	Please select
0.43	62.2	0.89	Ta.22697.2.A1_at	CA695020	-	-	1e+1	At5g53300	UBC10 (ubiquitin-conjugating enzyme 10)	O.I.	H.G.	S.X.	Please select
0.41	59.6	0.91	TaAffx.107854.1.S1_at	CA694388	-	-	4e+0	At2g25700	ASK3 (ARABIDOPSIS SKP1-LIKE 3)	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.91	Ta.22868.3.A1_at	CA712925	-	-	4e+0	At1g67195	MIR414 (MICRORNA 414)	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.91	Ta.28591.3.S1_at	CA669352	-	-	4e+0	At5g03345	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.1	99.3	GSM324488	Si- B+ rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
5.8	97.9	GSM324487	Si- B+ rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
5.0	97.4	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
4.7	97.1	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.7	95.8	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.4	95.2	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
2.9	94.0	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
2.8	93.6	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.8	93.6	GSM298064	Crown tissue of Harnesk at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
2.5	92.5	GSM139928	Anther immature pollen rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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