Co-expression analysis

Gene ID	Ta.8149.1.A1_x_at
Gene name
Homology with Arabidopsis	Similar to At4g14240: - (HF=7e-35)
Module size	24 genes
NF	0.38
%ile	60.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	90.8	0.94	Ta.8149.1.A1_x_at	CK205375	-	-	7e-35	At4g14240	-	O.I.	H.G.	S.X.	Please select
0.55	76.8	0.96	Ta.7856.1.S1_at	CD873175	-	-	5e-1	At1g54820	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.53	74.9	0.96	TaAffx.71229.1.A1_at	BE492094	-	-	7e+0	At4g10595	LCR2 (Low-molecular-weight cysteine-rich 2)	O.I.	H.G.	S.X.	Please select
0.52	73.7	0.95	Ta.12106.1.S1_at	BT009522.1	-	-	6e-23	At2g01350	QPT (QUINOLINATE PHOSHORIBOSYLTRANSFERASE)	O.I.	H.G.	S.X.	Please select
0.49	69.7	0.96	Ta.3001.1.S1_at	CK211723	-	-	4e-21	At5g56140	KH domain-containing protein	O.I.	H.G.	S.X.	Please select
0.48	69.0	0.95	Ta.8034.1.A1_at	BQ161157	-	-	2e-3	At3g56480	myosin heavy chain-related	O.I.	H.G.	S.X.	Please select
0.45	65.2	0.96	Ta.12707.1.A1_a_at	CD491136	-	-	5e+0	At4g20870	FAH2 (FATTY ACID HYDROXYLASE 2)	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.95	Ta.11816.1.A1_at	BQ170854	-	-	2e+0	At4g08590	ORTHL (ORTHRUS-LIKE)	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.96	Ta.22932.1.S1_x_at	CA685443	-	-	1e+0	At4g15710	unknown protein	O.I.	H.G.	S.X.	Please select
0.42	60.9	0.95	Ta.5420.1.S1_at	CD452372	-	-	1e+0	At3g01660	methyltransferase	O.I.	H.G.	S.X.	Please select
0.39	56.1	0.95	Ta.9677.1.S1_x_at	CA652973	-	-	3e+1	At5g26692	-	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.96	Ta.8178.1.S1_at	CA652442	-	-	1e+0	At5g54230	MYB49 (myb domain protein 49)	O.I.	H.G.	S.X.	Please select
0.37	53.0	0.96	Ta.12682.1.A1_at	BQ170634	-	-	1e+0	At3g22210	unknown protein	O.I.	H.G.	S.X.	Please select
0.37	53.0	0.95	TaAffx.12212.1.A1_at	BJ285464	-	-	6e-21	At4g17370	oxidoreductase family protein	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.95	TaAffx.71213.1.S1_at	BE492034	ELF3 protein	-	1e+0	At3g50610	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.94	Ta.23172.1.S1_at	CD867949	-	-	1e+0	At5g55870	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.95	Ta.6405.1.S1_at	CA643483	-	-	2e+0	At1g27050	ATHB54 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 54)	O.I.	H.G.	S.X.	Please select
0.32	44.4	0.96	Ta.24224.1.A1_at	BT009564.1	-	-	3e-1	At1g59640	ZCW32	O.I.	H.G.	S.X.	Please select
0.30	40.9	0.95	Ta.25251.1.S1_at	CD373624	-	-	2e-20	At5g13640	ATPDAT	O.I.	H.G.	S.X.	Please select
0.28	39.2	0.95	Ta.7832.1.S1_at	CA646083	-	-	9e-2	At2g04900	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.95	Ta.14532.1.S1_at	CD900916	-	-	4e-45	At1g14400	UBC1 (UBIQUITIN CARRIER PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.95	Ta.12157.1.A1_at	BQ171709	-	-	3e+0	At5g24200	triacylglycerol lipase	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.96	Ta.9121.1.S1_at	BE493270	-	-	1e-5	At2g29300	tropinone reductase, putative / tropine dehydrogenase, putative	O.I.	H.G.	S.X.	Please select
0.19	22.4	0.95	TaAffx.55278.1.S1_x_at	CA668780	Plasma membrane H+-ATPase	-	4e+0	At5g27238	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.0	96.3	GSM314262	tissue type: seedling, root - rep3	GSE12508	Transcription patterns during wheat development
3.9	96.1	GSM298069	Leaf tissue of Paragon at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.8	96.0	GSM314260	tissue type: seedling, root - rep1	GSE12508	Transcription patterns during wheat development
3.7	95.8	GSM314272	tissue type: floral bracts, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
3.6	95.6	GSM314256	tissue type: germinating seed, root - rep3	GSE12508	Transcription patterns during wheat development
3.5	95.4	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
3.5	95.4	GSM314278	tissue type: anthers, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
3.5	95.4	GSM314274	tissue type: floral bracts, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
3.4	95.2	GSM314279	tissue type: anthers, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
3.4	95.2	GSM314273	tissue type: floral bracts, before anthesis - rep2	GSE12508	Transcription patterns during wheat development

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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