Co-expression analysis

Gene ID	Ta.8093.2.S1_a_at
Gene name
Homology with Arabidopsis	Similar to At5g65760: serine carboxypeptidase S28 family protein (HF=1e-12)
Module size	22 genes
NF	0.45
%ile	70.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.93	98.7	0.92	Ta.8093.2.S1_a_at	CA615237	-	-	1e-12	At5g65760	serine carboxypeptidase S28 family protein	O.I.	H.G.	S.X.	Please select
0.54	75.5	0.94	Ta.4063.3.S1_at	CA732547	-	-	8e-1	At5g66570	PSBO1 (PS II OXYGEN-EVOLVING COMPLEX 1)	O.I.	H.G.	S.X.	Please select
0.54	75.5	0.95	TaAffx.85941.1.S1_at	CA618291	-	-	2e+1	At5g23760	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please select
0.53	74.9	0.95	TaAffx.39326.1.S1_at	BG909116	-	-	5e+0	At5g44170	-	O.I.	H.G.	S.X.	Please select
0.49	69.7	0.93	TaAffx.39451.1.S1_at	BG905127	-	-	3e+0	At2g18920	unknown protein	O.I.	H.G.	S.X.	Please select
0.48	69.0	0.94	TaAffx.79532.1.S1_at	CA713411	-	-	3e+1	At4g02360	unknown protein	O.I.	H.G.	S.X.	Please select
0.48	69.0	0.94	Ta.26301.1.A1_at	CD490595	-	-	2e+0	At1g75460	ATP-dependent protease La (LON) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.46	66.8	0.94	Ta.7193.3.S1_at	CA718160	-	-	1e+1	At5g08400	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	66.8	0.95	TaAffx.6157.1.S1_at	CA690748	-	-	4e+0	At2g42930	glycosyl hydrolase family protein 17	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.95	Ta.6762.3.S1_at	BJ246546	-	-	1e+0	At5g61490	-	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.96	Ta.6759.2.S1_at	BJ211299	-	-	2e+0	At5g63310	NDPK2 (NUCLEOSIDE DIPHOSPHATE KINASE 2)	O.I.	H.G.	S.X.	Please select
0.42	60.9	0.94	TaAffx.53587.2.S1_at	CA697989	-	-	7e-2	At4g34290	SWIB complex BAF60b domain-containing protein	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.95	TaAffx.4857.1.S1_at	CA730111	-	-	4e+0	At1g77682	-	O.I.	H.G.	S.X.	Please select
0.39	56.1	0.94	TaAffx.82721.1.S1_at	CA668034	-	-	3e+1	At4g20780	calcium-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.94	Ta.6759.2.S1_x_at	BJ211299	-	-	2e+0	At5g63310	NDPK2 (NUCLEOSIDE DIPHOSPHATE KINASE 2)	O.I.	H.G.	S.X.	Please select
0.37	53.0	0.95	TaAffx.109175.2.S1_x_at	CA679138	-	-	1e+0	At4g29020	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.96	TaAffx.55653.1.S1_at	CA663094	-	-	1e+1	At4g20030	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.34	48.1	0.94	TaAffx.29371.1.S1_at	CA644147	-	-	4e+0	At5g18310	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.94	TaAffx.54172.1.S1_at	CA684890	-	-	2e+1	At3g47980	integral membrane HPP family protein	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.95	TaAffx.118620.1.S1_at	BJ316617	-	-	1e+0	At2g31560	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.96	TaAffx.73323.1.S1_at	CA713945	-	-	3e+0	At5g45870	Bet v I allergen family protein	O.I.	H.G.	S.X.	Please select
0.28	39.2	0.95	TaAffx.78822.1.S1_at	CA726823	-	-	1e+0	At5g01075	beta-galactosidase	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
16.5	99.6	GSM324487	Si- B+ rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
11.0	99.3	GSM324488	Si- B+ rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
8.4	98.9	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.8	98.7	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
6.3	98.2	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
6.1	98.1	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
5.9	98.0	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.9	98.0	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.4	97.7	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
5.2	97.5	GSM298090	Leaf tissue of Solstice at 5 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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