Co-expression analysis

Gene ID Ta.807.2.S1_at
Gene name
Homology with ArabidopsisSimilar to At3g07110: 60S ribosomal protein L13A (RPL13aA) (HF=1e-23)
Module size 11 genes
NF 0.51
%ile 77.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5678.60.97Ta.807.2.S1_atBQ801369--1e-23At3g0711060S ribosomal protein L13A (RPL13aA)O.I.H.G.S.X.
0.7087.20.98Ta.9772.1.S1_a_atCD866604--9e-3At4g29430rps15ae (ribosomal protein S15A E)O.I.H.G.S.X.
0.7087.20.98Ta.4443.1.S1_s_atBJ228834--6e+0At4g38960zinc finger (B-box type) family proteinO.I.H.G.S.X.
0.6786.30.97Ta.4443.1.S1_atBJ228834--6e+0At4g38960zinc finger (B-box type) family proteinO.I.H.G.S.X.
0.6786.30.98Ta.9772.2.S1_x_atCA606107--4e-3At4g29430rps15ae (ribosomal protein S15A E)O.I.H.G.S.X.
0.6081.00.97Ta.6086.1.A1_x_atCA611559--2e-6At3g22660rRNA processing protein-relatedO.I.H.G.S.X.
0.5678.60.98Ta.9772.1.S1_x_atCD866604--9e-3At4g29430rps15ae (ribosomal protein S15A E)O.I.H.G.S.X.
0.5072.40.97Ta.6020.2.S1_atBJ242162--8e-14At3g01790ribosomal protein L13 family proteinO.I.H.G.S.X.
0.3753.00.97Ta.6900.1.S1_atBJ227692--8e+0At5g48690-O.I.H.G.S.X.
0.3549.80.97Ta.3789.2.S1_a_atCK211701--9e-24At3g05590RPL18 (RIBOSOMAL PROTEIN L18)O.I.H.G.S.X.
0.1922.40.98Ta.2887.2.S1_x_atCA641966--2e-2At5g27700structural constituent of ribosomeO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.599.3GSM314289tissue type: 22 DAP endosperm - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
11.399.3GSM314287tissue type: 22 DAP endosperm - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
11.199.3GSM314288tissue type: 22 DAP endosperm - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
4.096.3GSM298073Crown tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.896.0GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.896.0GSM298072Crown tissue of Paragon at 3 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.896.0GSM298071Crown tissue of Paragon at 3 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.595.4GSM314253tissue type: germinating seed, coleoptile - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
3.495.2GSM314259tissue type: germinating seed, embryo - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
3.495.2GSM314260tissue type: seedling, root - rep1GSE12508Transcription patterns during wheat developmentLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage