Co-expression analysis

Gene ID	Ta.7928.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At2g44920: thylakoid lumenal 15 kDa protein, chloroplast (HF=1e-4)
Module size	6 genes
NF	0.27
%ile	44.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	89.1	0.95	Ta.7928.1.S1_at	BQ160971	-	-	1e-4	At2g44920	thylakoid lumenal 15 kDa protein, chloroplast	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.97	TaAffx.3767.2.S1_s_at	CD873925	-	-	1e+0	At4g37290	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.96	TaAffx.3767.3.S1_s_at	CK211869	-	-	3e-1	At4g24750	-	O.I.	H.G.	S.X.	Please select
0.25	32.1	0.96	Ta.7928.2.S1_a_at	CA599037	-	-	7e-5	At2g44920	thylakoid lumenal 15 kDa protein, chloroplast	O.I.	H.G.	S.X.	Please select
0.14	15.8	0.96	TaAffx.120241.2.A1_at	BJ240301	-	-	1e+0	At3g24517	unknown protein	O.I.	H.G.	S.X.	Please select
0.11	12.4	0.96	Ta.595.1.S1_at	CK207867	Omega-6 fatty acid desaturase-like	-	5e-15	At4g30950	FAD6 (FATTY ACID DESATURASE 6)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.2	98.5	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
5.7	97.9	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.7	97.9	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.5	97.8	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.6	97.0	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
4.5	96.9	GSM343682	Wheat var. Kennedy_control_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
4.4	96.8	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.4	96.8	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.1	96.4	GSM343688	Wheat var. Kennedy_Fp inoculated_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
3.9	96.1	GSM343678	Wheat var. Kennedy_control_rep1	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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