Co-expression analysis

Gene ID Ta.7882.2.S1_a_at
Gene name
Homology with ArabidopsisSimilar to At2g04790: unknown protein (HF=1e+0)
Module size 8 genes
NF 0.37
%ile 59.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4464.50.84Ta.7882.2.S1_a_atCA645408--1e+0At2g04790unknown proteinO.I.H.G.S.X.
0.5979.80.85Ta.20700.1.S1_atCA602436--3e-1At5g23395-O.I.H.G.S.X.
0.5374.90.87Ta.13810.1.S1_s_atCA652498--3e+0At1g04250AXR3 (AUXIN RESISTANT 3)O.I.H.G.S.X.
0.4666.80.87Ta.12393.1.A1_atBQ172239--7e-2At4g24070carbon-carbon lyaseO.I.H.G.S.X.
0.4058.40.94Ta.13810.1.S1_atCA652498--3e+0At1g04250AXR3 (AUXIN RESISTANT 3)O.I.H.G.S.X.
0.2939.20.88Ta.26188.1.A1_atCD452630--6e-1At3g02720DJ-1 family protein / protease-relatedO.I.H.G.S.X.
0.2125.50.86Ta.18807.1.A1_atCA642371--8e-2At3g48460GDSL-motif lipase/hydrolase family proteinO.I.H.G.S.X.
0.1821.00.87TaAffx.10980.1.S1_atCA632023--3e-3At4g09160SEC14 cytosolic factor family protein / phosphoglyceride transfer family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.599.6GSM314262tissue type: seedling, root - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
14.799.5GSM314261tissue type: seedling, root - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
14.399.5GSM314260tissue type: seedling, root - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
6.898.4GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.897.2GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.296.6GSM314264tissue type: seedling, crown - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
4.296.6GSM298084Crown tissue of Solstice at 3 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.196.4GSM250897TcLr1_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.896.0GSM250895Tc_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.795.8GSM314265tissue type: seedling, crown - rep3GSE12508Transcription patterns during wheat developmentLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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