Co-expression analysis

Gene ID Ta.7861.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At3g63010: GID1B (GA INSENSITIVE DWARF1B) (HF=2e+0)
Module size 20 genes
NF 0.40
%ile 63.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6986.90.94Ta.7861.1.S1_atCD922623--2e+0At3g63010GID1B (GA INSENSITIVE DWARF1B)O.I.H.G.S.X.
0.7389.10.94TaAffx.107397.1.S1_atCA700358--1e+0At5g43570serine-type endopeptidase inhibitorO.I.H.G.S.X.
0.6583.90.94TaAffx.55709.1.S1_atCA662290--3e-1At5g05230ubiquitin-protein ligaseO.I.H.G.S.X.
0.6081.00.94TaAffx.23723.1.S1_atCA731348--2e+1At5g09445unknown proteinO.I.H.G.S.X.
0.5678.60.95TaAffx.110697.1.S1_atCA679731--4e+0At1g47450unknown proteinO.I.H.G.S.X.
0.5475.50.95TaAffx.105451.1.S1_atCA734135--1e+0At3g06730thioredoxin family proteinO.I.H.G.S.X.
0.4969.70.95Ta.30411.1.S1_atCK209297--5e+0At5g62280unknown proteinO.I.H.G.S.X.
0.4565.20.94TaAffx.55475.1.S1_atCA665552--8e-1At2g46870NGA1 (NGATHA1)O.I.H.G.S.X.
0.4159.60.94TaAffx.113621.1.S1_atCA608332--3e+0At4g25433peptidoglycan-binding LysM domain-containing proteinO.I.H.G.S.X.
0.4159.60.95TaAffx.73323.1.S1_atCA713945--3e+0At5g45870Bet v I allergen family proteinO.I.H.G.S.X.
0.4159.60.95TaAffx.78517.1.S1_atCA731451--4e+0At2g25720unknown proteinO.I.H.G.S.X.
0.3549.80.94TaAffx.77881.1.S1_atCA741326--2e+1Atcg00065-O.I.H.G.S.X.
0.3549.80.95TaAffx.26470.1.S1_atCA688638--4e+0At4g21610LOL2 (LSD ONE LIKE 2)O.I.H.G.S.X.
0.3346.90.94TaAffx.55930.1.S1_atCA659349--6e+0At5g63240glycosyl hydrolase family protein 17O.I.H.G.S.X.
0.3346.90.96TaAffx.51594.1.S1_atCA723204--1e+0At3g51810EM1 (LATE EMBRYOGENESIS ABUNDANT 1)O.I.H.G.S.X.
0.2735.60.95TaAffx.31313.1.S1_atCA617546--1e+1At3g52561unknown proteinO.I.H.G.S.X.
0.2633.60.95TaAffx.131315.1.S1_atBJ278064--2e-5At4g09810transporter-relatedO.I.H.G.S.X.
0.2329.00.94TaAffx.31914.1.S1_atCA605344--6e+0At2g42900-O.I.H.G.S.X.
0.2024.00.95TaAffx.3664.1.S1_atCD876496--2e+0At2g47710universal stress protein (USP) family proteinO.I.H.G.S.X.
0.1618.20.95Ta.3911.2.S1_s_atCA604151--4e+0At2g44290protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (YLS3)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.299.2GSM324488Si- B+ rep2GSE12936Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildewLink to GEO
7.098.5GSM324487Si- B+ rep1GSE12936Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildewLink to GEO
6.598.3GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.597.8GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.997.3GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.797.1GSM314275tissue type: pistil, before anthesis - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
4.697.0GSM314276tissue type: pistil, before anthesis - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
4.697.0GSM314277tissue type: pistil, before anthesis - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
4.096.3GSM111233genotype H8 developing seed at 5 days after anthesis, biological rep2GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
3.495.2GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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