Co-expression analysis

Gene ID	Ta.7751.2.A1_x_at
Gene name
Homology with Arabidopsis	Similar to At3g62020: GLP10 (GERMIN-LIKE PROTEIN 10) (HF=5e-1)
Module size	6 genes
NF	0.00
%ile	0.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	88.0	0.81	Ta.7751.2.A1_x_at	CA740883	-	-	5e-1	At3g62020	GLP10 (GERMIN-LIKE PROTEIN 10)	O.I.	H.G.	S.X.	Please select
0.11	12.4	0.89	Ta.2554.3.A1_at	CA726606	-	-	3e-1	At3g13672	seven in absentia (SINA) family protein	O.I.	H.G.	S.X.	Please select
0.11	12.4	0.88	Ta.24372.3.S1_x_at	CA708812	-	-	2e+1	At5g63040	unknown protein	O.I.	H.G.	S.X.	Please select
0.07	8.6	0.87	Ta.8245.2.S1_x_at	CA680416	-	-	4e+0	At5g13570	DCP2 (DECAPPING 2)	O.I.	H.G.	S.X.	Please select
-	0.7	0.85	Ta.19453.1.S1_x_at	CA652007	-	-	8e-2	At3g23610	dual specificity protein phosphatase (DsPTP1)	O.I.	H.G.	S.X.	Please select
-	0.7	0.83	TaAffx.114398.1.S1_at	CA593807	-	-	6e-1	At1g26670	VTI1B	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.7	98.4	GSM298063	Crown tissue of Harnesk at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
6.6	98.3	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
5.6	97.8	GSM298060	Crown tissue of Harnesk at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
5.3	97.6	GSM298061	Crown tissue of Harnesk at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
5.1	97.5	GSM298093	Crown tissue of Solstice at 5 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
5.0	97.4	GSM298085	Crown tissue of Solstice at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
4.7	97.1	GSM298071	Crown tissue of Paragon at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
4.5	96.9	GSM138193	genotype B33 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
4.5	96.9	GSM298094	Crown tissue of Solstice at 9 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
4.3	96.7	GSM298083	Crown tissue of Solstice at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

A co-expression module including the grape gene, 1606954_at, orthologous to the query gene, Ta.7751.2.A1_x_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	1606954_at	At3g62020	-	-	1e+1	At5g23090	NF-YB13 (NUCLEAR FACTOR Y, SUBUNIT B13)	O.I.	H.G.	S.X.	Please select
0.04	5.2	1614881_at	At3g62020	hypothetical protein LOC100261031	-	1e-153	At5g08670	ATP binding / hydrogen ion transporting ATP synthase, rotational mechanism	O.I.	H.G.	S.X.	Please select
0.03	4.2	AFFX-Vvi-actin-3_c1_s_at	At3g62020	actin 1	-				O.I.	H.G.	S.X.	Please select
0.02	3.2	1615204_at	At3g62020	-	-	1e+0	At3g21580	cobalt ion transmembrane transporter	O.I.	H.G.	S.X.	Please select
0.02	3.2	1611056_at	At3g62020	hypothetical protein LOC100251208	-	7e-3	At2g27760	ATIPT2 (TRNA ISOPENTENYLTRANSFERASE 2)	O.I.	H.G.	S.X.	Please select
0.02	3.2	1607687_s_at	At3g62020	hypothetical protein LOC100241478	-	3e-42	At5g26667	PYR6	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage