CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.7751.2.A1_x_at

Gene name
Homology with Arabidopsis Similar to At3g62020: GLP10 (GERMIN-LIKE PROTEIN 10) (HF=5e-1)

Module size 6 genes

NF 0.00

%ile 0.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.71 88.0 0.81 Ta.7751.2.A1_x_at CA740883 - - 5e-1 At3g62020 GLP10 (GERMIN-LIKE PROTEIN 10) O.I. H.G. S.X.
0.11 12.4 0.89 Ta.2554.3.A1_at CA726606 - - 3e-1 At3g13672 seven in absentia (SINA) family protein O.I. H.G. S.X.
0.11 12.4 0.88 Ta.24372.3.S1_x_at CA708812 - - 2e+1 At5g63040 unknown protein O.I. H.G. S.X.
0.07 8.6 0.87 Ta.8245.2.S1_x_at CA680416 - - 4e+0 At5g13570 DCP2 (DECAPPING 2) O.I. H.G. S.X.
- 0.7 0.85 Ta.19453.1.S1_x_at CA652007 - - 8e-2 At3g23610 dual specificity protein phosphatase (DsPTP1) O.I. H.G. S.X.
- 0.7 0.83 TaAffx.114398.1.S1_at CA593807 - - 6e-1 At1g26670 VTI1B O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.7 98.4 GSM298063 Crown tissue of Harnesk at 9 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
6.6 98.3 GSM298092 Crown tissue of Solstice at 3 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
5.6 97.8 GSM298060 Crown tissue of Harnesk at 3 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
5.3 97.6 GSM298061 Crown tissue of Harnesk at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
5.1 97.5 GSM298093 Crown tissue of Solstice at 5 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
5.0 97.4 GSM298085 Crown tissue of Solstice at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
4.7 97.1 GSM298071 Crown tissue of Paragon at 3 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
4.5 96.9 GSM138193 genotype B33 developing seed at 5 days after anthesis, biological rep3 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
4.5 96.9 GSM298094 Crown tissue of Solstice at 9 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
4.3 96.7 GSM298083 Crown tissue of Solstice at 3 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.30425.1.A1_at, orthologous to the query gene, Ta.7751.2.A1_x_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 91.1 PtpAffx.30425.1.A1_at At3g62020 - - 2e-1 At3g62690 ATL5 (ATL5) O.I. H.G. S.X.
0.13 21.6 PtpAffx.31610.2.S1_at At3g62020 hypothetical protein - 2e+0 At3g42628 phosphoenolpyruvate carboxylase-related / PEP carboxylase-related O.I. H.G. S.X.
0.12 19.6 PtpAffx.95541.1.S1_at At3g62020 hypothetical protein - 3e-1 At4g16510 YbaK/prolyl-tRNA synthetase-related O.I. H.G. S.X.
0.06 9.8 PtpAffx.142575.1.A1_at At3g62020 - - 3e+0 At1g76080 CDSP32 (CHLOROPLASTIC DROUGHT-INDUCED STRESS PROTEIN OF 32 KD) O.I. H.G. S.X.
0.02 3.6 PtpAffx.14340.3.S1_a_at At3g62020 hypothetical protein - 3e-43 At2g28840 ankyrin repeat family protein O.I. H.G. S.X.
0.01 2.2 PtpAffx.220939.1.S1_at At3g62020 - - 3e-2 At1g15690 AVP1 O.I. H.G. S.X.
0.00 0.4 PtpAffx.121803.1.S1_at At3g62020 - - 7e-1 At4g32440 agenet domain-containing protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Vitis_vinifera
Zea_mays

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