Co-expression analysis

Gene ID	Ta.7716.2.S1_s_at
Gene name
Homology with Arabidopsis	Similar to At3g26511: unknown protein (HF=4e+0)
Module size	23 genes
NF	0.33
%ile	54.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.92	98.5	0.82	Ta.7716.2.S1_s_at	BJ317348	-	-	4e+0	At3g26511	unknown protein	O.I.	H.G.	S.X.	Please select
0.52	73.7	0.84	TaAffx.29201.1.S1_at	CA648220	-	-	4e+0	At3g60540	sec61beta family protein	O.I.	H.G.	S.X.	Please select
0.49	69.7	0.80	Ta.7716.1.S1_at	BJ322896	-	-	4e-1	At1g12665	-	O.I.	H.G.	S.X.	Please select
0.46	66.8	0.88	TaAffx.59340.1.S1_at	CA639167	-	-	6e+0	At5g46960	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.	Please select
0.46	66.8	0.91	Ta.30507.2.S1_x_at	BJ321266	-	-	4e+0	At4g03600	unknown protein	O.I.	H.G.	S.X.	Please select
0.45	65.2	0.87	Ta.4678.3.S1_x_at	CK215282	WRKY8 transcription factor	-	5e+0	At3g21150	zinc finger (B-box type) family protein	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.86	Ta.8482.1.A1_at	BQ161961	WRKY27 transcription factor	-	3e+0	At5g47700	60S acidic ribosomal protein P1 (RPP1C)	O.I.	H.G.	S.X.	Please select
0.41	59.6	0.87	Ta.4678.2.S1_at	CK163938	WRKY8 transcription factor	-	1e-2	At5g07600	oleosin / glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.37	53.0	0.88	Ta.4678.1.S1_at	CD935984	WRKY8 transcription factor	-	3e+0	At5g07100	WRKY26	O.I.	H.G.	S.X.	Please select
0.37	53.0	0.90	Ta.4678.1.S1_x_at	CD935984	WRKY8 transcription factor	-	3e+0	At5g07100	WRKY26	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.90	Ta.299.3.S1_a_at	BJ223133	-	-	4e+0	At3g20557	unknown protein	O.I.	H.G.	S.X.	Please select
0.34	48.1	0.83	TaAffx.78545.5.S1_x_at	CA698524	WRKY39 transcription factor	-	1e+0	At2g28760	NAD-dependent epimerase/dehydratase family protein	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.81	Ta.7389.3.S1_x_at	BJ287252	-	-	6e-1	At3g02670	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.32	44.4	0.91	Ta.30507.1.S1_at	CK214499	-	-	2e+0	At5g35230	unknown protein	O.I.	H.G.	S.X.	Please select
0.28	39.2	0.89	Ta.7568.3.S1_x_at	CA594090	-	-	3e-1	At5g37780	CAM1 (CALMODULIN 1)	O.I.	H.G.	S.X.	Please select
0.28	39.2	0.83	TaAffx.4779.1.S1_at	BJ269926	-	-	2e+0	At4g12920	aspartyl protease family protein	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.89	Ta.3850.2.S1_at	CD939384	-	-	1e-1	At5g17650	glycine/proline-rich protein	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.87	Ta.7568.1.S1_x_at	BJ276089	-	-	4e-1	At5g37780	CAM1 (CALMODULIN 1)	O.I.	H.G.	S.X.	Please select
0.24	30.3	0.85	TaAffx.44057.2.S1_at	BJ269142	-	-	4e+0	Atcg00020	-	O.I.	H.G.	S.X.	Please select
0.24	30.3	0.86	TaAffx.44057.2.S1_x_at	BJ269142	-	-	4e+0	Atcg00020	-	O.I.	H.G.	S.X.	Please select
0.22	27.1	0.87	Ta.4580.2.S1_at	BJ268280	Calcium-dependent protein kinase	-	8e-14	At5g12480	CPK7 (calmodulin-domain protein kinase 7)	O.I.	H.G.	S.X.	Please select
0.21	25.5	0.89	Ta.3850.1.S1_at	CD452378	-	-	6e-4	At1g01540	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.16	18.2	0.85	TaAffx.71016.1.A1_at	BE424472	-	-	1e+0	At3g22930	calmodulin, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.6	99.1	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
8.0	98.8	GSM138169	genotype B68 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
7.9	98.7	GSM143521	Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
7.5	98.6	GSM138154	genotype H5 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
6.1	98.1	GSM143523	Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
5.6	97.8	GSM314268	tissue type: seedling, leaf - rep3	GSE12508	Transcription patterns during wheat development
5.1	97.5	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.0	97.4	GSM314267	tissue type: seedling, leaf - rep2	GSE12508	Transcription patterns during wheat development
4.5	96.9	GSM138188	genotype F38a developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
4.4	96.8	GSM143508	Thatcher_Lr34 (resistant), mock inoculated basal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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