Co-expression analysis

Gene ID	Ta.7716.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g12665: - (HF=4e-1)
Module size	7 genes
NF	0.60
%ile	85.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	88.0	0.81	Ta.7716.1.S1_at	BJ322896	-	-	4e-1	At1g12665	-	O.I.	H.G.	S.X.	Please select
0.73	89.1	0.84	Ta.7389.2.A1_x_at	CK215961	-	-	3e-1	At3g02670	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.82	Ta.7389.1.S1_x_at	BJ272922	-	-	3e-1	At1g17300	unknown protein	O.I.	H.G.	S.X.	Please select
0.57	79.2	0.82	Ta.5149.1.A1_at	CK213896	-	-	3e-1	At1g07690	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	66.8	0.87	Ta.7389.3.S1_x_at	BJ287252	-	-	6e-1	At3g02670	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.46	66.8	0.82	TaAffx.132281.2.S1_x_at	CK212051	-	-	6e+0	At1g70700	TIFY7	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.83	TaAffx.63970.1.A1_at	CK163758	-	-	6e+0	At5g62500	ATEB1B (END BINDING PROTEIN 1B)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
24.9	99.8	GSM314268	tissue type: seedling, leaf - rep3	GSE12508	Transcription patterns during wheat development
20.4	99.7	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
19.4	99.7	GSM314262	tissue type: seedling, root - rep3	GSE12508	Transcription patterns during wheat development
13.2	99.5	GSM143521	Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
13.2	99.5	GSM314267	tissue type: seedling, leaf - rep2	GSE12508	Transcription patterns during wheat development
10.5	99.2	GSM138154	genotype H5 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
8.3	98.8	GSM138188	genotype F38a developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
8.1	98.8	GSM314260	tissue type: seedling, root - rep1	GSE12508	Transcription patterns during wheat development
7.5	98.6	GSM138169	genotype B68 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
7.1	98.5	GSM138149	genotype F29 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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