Co-expression analysis

Gene ID	Ta.7635.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At1g10522: unknown protein (HF=8e-2)
Module size	6 genes
NF	0.47
%ile	72.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	89.1	0.94	Ta.7635.1.A1_at	BG907453	-	-	8e-2	At1g10522	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.96	Ta.1964.1.S1_a_at	CD890475	-	-	2e+0	At3g13500	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.96	Ta.13194.1.S1_at	BJ266127	-	-	4e-3	At3g29034	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.97	Ta.1964.3.S1_x_at	CK213330	-	-	2e+0	At3g13500	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.96	TaAffx.59588.2.S1_at	CA609866	-	-	4e-3	At3g18165	MOS4 (Modifier of snc1,4)	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.96	Ta.28883.1.A1_at	AJ612385	-	-	5e+0	At5g20720	CPN20 (CHAPERONIN 20)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.8	99.4	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
4.8	97.2	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.6	97.0	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
4.0	96.3	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.9	96.1	GSM250908	Tc_7dpi_inoculated_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.7	95.8	GSM298087	Crown tissue of Solstice at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.2	94.8	GSM314273	tissue type: floral bracts, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
3.1	94.5	GSM143520	Thatcher_Lr34 (susceptible), rust inoculated distal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
2.9	94.0	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
2.7	93.3	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

A co-expression module including the grape gene, 1613459_at, orthologous to the query gene, Ta.7635.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.93	99.2	1613459_at	At1g10522	hypothetical protein LOC100250844	-	6e-6	At4g29660	EMB2752 (EMBRYO DEFECTIVE 2752)	O.I.	H.G.	S.X.	Please select
0.50	72.7	1621267_at	At1g10522	hypothetical protein LOC100246712	-	5e+0	At5g57910	unknown protein	O.I.	H.G.	S.X.	Please select
0.47	67.7	1611047_at	At1g10522	DnaJ protein-like	-	1e-27	At3g44110	ATJ3	O.I.	H.G.	S.X.	Please select
0.46	66.5	1611413_at	At1g10522	hypothetical protein LOC100258668	-	4e-26	At3g09840	CDC48 (CELL DIVISION CYCLE 48)	O.I.	H.G.	S.X.	Please select
0.43	61.5	1621766_at	At1g10522	hypothetical protein LOC100261468	-	5e-10	At3g21430	-	O.I.	H.G.	S.X.	Please select
0.42	60.1	1607932_at	At1g10522	hypothetical protein LOC100250334	-	4e-13	At1g75560	zinc knuckle (CCHC-type) family protein	O.I.	H.G.	S.X.	Please select
0.41	58.7	1611162_at	At1g10522	hypothetical protein LOC100253143	-	1e-56	At2g38730	peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative	O.I.	H.G.	S.X.	Please select
0.40	57.7	1610832_at	At1g10522	hypothetical protein LOC100262194	-	2e-19	At4g30935	WRKY32	O.I.	H.G.	S.X.	Please select
0.39	54.9	1618829_at	At1g10522	hypothetical protein LOC100245056	-	2e+0	At3g17770	dihydroxyacetone kinase family protein	O.I.	H.G.	S.X.	Please select
0.38	53.6	1609717_at	At1g10522	hypothetical protein LOC100257178	-	1e-23	At5g20290	40S ribosomal protein S8 (RPS8A)	O.I.	H.G.	S.X.	Please select
0.37	51.7	1606697_at	At1g10522	-	-	4e-22	At2g04170	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	O.I.	H.G.	S.X.	Please select
0.37	51.7	1614654_at	At1g10522	hypothetical protein LOC100246891	-	4e-94	At1g52980	GTP-binding family protein	O.I.	H.G.	S.X.	Please select
0.36	50.7	1611456_at	At1g10522	hypothetical protein LOC100248358	-	5e-47	At5g59180	NRPB7	O.I.	H.G.	S.X.	Please select
0.34	46.8	1609316_at	At1g10522	hypothetical protein LOC100244322	-	1e-4	At4g39870	-	O.I.	H.G.	S.X.	Please select
0.34	46.8	1614766_at	At1g10522	hypothetical protein LOC100244101	-	5e-29	At4g32330	-	O.I.	H.G.	S.X.	Please select
0.33	45.7	1612557_at	At1g10522	similar to ubiquitin-associated protein	-	2e-7	At4g24690	ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.30	39.4	1613049_at	At1g10522	hypothetical protein LOC100241495	-	6e-13	At1g61670	-	O.I.	H.G.	S.X.	Please select
0.29	37.7	1617007_at	At1g10522	hypothetical protein LOC100267570	-	4e-31	At1g80620	ribosomal protein S15 family protein	O.I.	H.G.	S.X.	Please select
0.26	32.0	1614188_at	At1g10522	hypothetical protein LOC100243205	-	2e-25	At3g10850	GLY2	O.I.	H.G.	S.X.	Please select
0.23	27.5	1608677_at	At1g10522	hypothetical protein LOC100258930	-	3e-22	At3g19130	ATRBP47B (RNA-binding protein 47B)	O.I.	H.G.	S.X.	Please select
0.17	18.2	1607555_a_at	At1g10522	hypothetical protein LOC100247698	-	4e+0	At1g60320	Toll-Interleukin-Resistance (TIR) domain-containing protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Zea_mays

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