Co-expression analysis

Gene ID	Ta.7635.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At1g10522: unknown protein (HF=8e-2)
Module size	6 genes
NF	0.47
%ile	72.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	89.1	0.94	Ta.7635.1.A1_at	BG907453	-	-	8e-2	At1g10522	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.96	Ta.1964.1.S1_a_at	CD890475	-	-	2e+0	At3g13500	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.96	Ta.13194.1.S1_at	BJ266127	-	-	4e-3	At3g29034	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.97	Ta.1964.3.S1_x_at	CK213330	-	-	2e+0	At3g13500	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.96	TaAffx.59588.2.S1_at	CA609866	-	-	4e-3	At3g18165	MOS4 (Modifier of snc1,4)	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.96	Ta.28883.1.A1_at	AJ612385	-	-	5e+0	At5g20720	CPN20 (CHAPERONIN 20)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.8	99.4	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
4.8	97.2	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.6	97.0	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
4.0	96.3	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.9	96.1	GSM250908	Tc_7dpi_inoculated_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.7	95.8	GSM298087	Crown tissue of Solstice at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.2	94.8	GSM314273	tissue type: floral bracts, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
3.1	94.5	GSM143520	Thatcher_Lr34 (susceptible), rust inoculated distal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
2.9	94.0	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
2.7	93.3	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

A co-expression module including the barley gene, Contig15509_at, orthologous to the query gene, Ta.7635.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	72.0	Contig15509_at	At1g10522	-	-	2e-3	At1g10522	unknown protein	O.I.	H.G.	S.X.	Please select
0.64	80.9	Contig25651_at	At1g10522	-	-	5e-1	At2g41225	unknown protein	O.I.	H.G.	S.X.	Please select
0.63	80.3	HV_CEa0014A19r2_at	At1g10522	-	-	3e+0	At1g58160	jacalin lectin family protein	O.I.	H.G.	S.X.	Please select
0.47	62.2	Contig13168_at	At1g10522	-	-	3e+0	At5g50130	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	Contig25401_at	At1g10522	-	-	4e-3	At1g78710	unknown protein	O.I.	H.G.	S.X.	Please select
0.42	55.2	Contig18328_at	At1g10522	-	-	5e-1	Atmg00110	-	O.I.	H.G.	S.X.	Please select
0.40	53.1	Contig6491_at	At1g10522	-	-	6e-1	At5g02230	haloacid dehalogenase-like hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	Contig8925_at	At1g10522	-	-	3e+0	At5g66060	iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	O.I.	H.G.	S.X.	Please select
0.35	45.1	Contig15411_at	At1g10522	-	-	2e-4	At5g49890	CLC-C (CHLORIDE CHANNEL C)	O.I.	H.G.	S.X.	Please select
0.28	35.5	Contig20549_at	At1g10522	-	-	2e-27	At2g39480	PGP6 (P-GLYCOPROTEIN 6)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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