CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.7635.1.A1_at

Gene name
Homology with Arabidopsis Similar to At1g10522: unknown protein (HF=8e-2)

Module size 6 genes

NF 0.47

%ile 72.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.73 89.1 0.94 Ta.7635.1.A1_at BG907453 - - 8e-2 At1g10522 unknown protein O.I. H.G. S.X.
0.44 64.5 0.96 Ta.1964.1.S1_a_at CD890475 - - 2e+0 At3g13500 unknown protein O.I. H.G. S.X.
0.40 58.4 0.96 Ta.13194.1.S1_at BJ266127 - - 4e-3 At3g29034 unknown protein O.I. H.G. S.X.
0.40 58.4 0.97 Ta.1964.3.S1_x_at CK213330 - - 2e+0 At3g13500 unknown protein O.I. H.G. S.X.
0.33 46.9 0.96 TaAffx.59588.2.S1_at CA609866 - - 4e-3 At3g18165 MOS4 (Modifier of snc1,4) O.I. H.G. S.X.
0.31 42.7 0.96 Ta.28883.1.A1_at AJ612385 - - 5e+0 At5g20720 CPN20 (CHAPERONIN 20) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.8 99.4 GSM111233 genotype H8 developing seed at 5 days after anthesis, biological rep2 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
4.8 97.2 GSM250899 TcLr34_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.6 97.0 GSM298092 Crown tissue of Solstice at 3 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
4.0 96.3 GSM250898 TcLr1_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.9 96.1 GSM250908 Tc_7dpi_inoculated_rep2 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.7 95.8 GSM298087 Crown tissue of Solstice at 9 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
3.2 94.8 GSM314273 tissue type: floral bracts, before anthesis - rep2 GSE12508 Transcription patterns during wheat development
3.1 94.5 GSM143520 Thatcher_Lr34 (susceptible), rust inoculated distal leaf, replication 3 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
2.9 94.0 GSM298067 Leaf tissue of Paragon at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
2.7 93.3 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At1g10522, orthologous to the query gene, Ta.7635.1.A1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.41 52.4 At1g10522 837593 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. H.G. S.X.
0.73 85.5 At3g03630 821203 CS26 O-acetylserine (thiol) lyase O.I. H.G. S.X.
0.71 84.2 At3g54090 824576 pfkB-type carbohydrate kinase family protein F:kinase activity;P:acetate fermentation, sucrose biosynthetic process, sucrose catabolic process, using beta-fructofuranosidase;C:nucleus, chloroplast, nucleoid, cytoplasm;BOPAMF O.I. H.G. S.X.
0.61 76.7 At2g04530 814995 CPZ Encodes a protein with RNAse Z activity suggesting a role in tRNA processing. Protein contains a signal sequence for import into the chloroplast. O.I. H.G. S.X.
0.61 76.7 At5g48470 834902 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. H.G. S.X.
0.50 65.3 At1g69200 843251 kinase F:kinase activity;P:acetate fermentation, sucrose biosynthetic process, sucrose catabolic process, using beta-fructofuranosidase;C:nucleoid;BOPAMF O.I. H.G. S.X.
0.40 50.8 At3g06730 819858 thioredoxin family protein F:unknown;P:cell redox homeostasis;C:thylakoid, chloroplast, nucleoid;BOMPFA O.I. H.G. S.X.
0.40 50.8 At5g51100 835183 FSD2 (FE SUPEROXIDE DISMUTASE 2) Fe superoxide dismutase whose mRNA levels are increased in response to exposure to UV-B. O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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