Co-expression analysis

Gene ID	Ta.7608.1.S1_x_at
Gene name
Homology with Arabidopsis	Similar to At2g17200: ubiquitin family protein (HF=7e-5)
Module size	6 genes
NF	0.62
%ile	87.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	89.1	0.98	Ta.7608.1.S1_x_at	CD452795	-	-	7e-5	At2g17200	ubiquitin family protein	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.98	Ta.1905.2.A1_x_at	BE446722	-	-	2e-9	At2g30110	ATUBA1	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.98	Ta.7585.1.S1_at	CK206711	-	-	3e-9	At1g72710	CKL2 (CASEIN KINASE 1-LIKE PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.53	74.9	0.98	Ta.95.1.S1_at	M90663.1	-	-	4e-32	At2g30110	ATUBA1	O.I.	H.G.	S.X.	Please select
0.53	74.9	0.98	Ta.9607.1.A1_a_at	CA708572	-	-	5e+0	At5g24510	60s acidic ribosomal protein P1, putative	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.98	Ta.1770.1.S1_a_at	CK209608	-	-	6e-1	At4g32930	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.2	94.8	GSM314270	tissue type: immature inflorescence - rep2	GSE12508	Transcription patterns during wheat development
3.2	94.8	GSM314269	tissue type: immature inflorescence - rep1	GSE12508	Transcription patterns during wheat development
2.8	93.6	GSM314271	tissue type: immature inflorescence - rep3	GSE12508	Transcription patterns during wheat development
2.8	93.6	GSM139928	Anther immature pollen rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.7	93.3	GSM139923	Anther telophaseI-telophaseII rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.6	92.9	GSM139922	Anther telophaseI-telophaseII rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.5	92.5	GSM139918	Anther leptotene-pachytene rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.4	92.0	GSM139924	Anther telophaseI-telophaseII rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.4	92.0	GSM139914	Anther pre-meiosis rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.3	91.5	GSM139920	Anther diplotene-anaphaseI rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat

Inter-species module comparison

A co-expression module including the maize gene, Zm.2654.2.S1_at, orthologous to the query gene, Ta.7608.1.S1_x_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	Zm.2654.2.S1_at	At2g17200	-	-	5e-12	At2g17200	ubiquitin family protein	O.I.	H.G.	S.X.	Please select
0.35	38.9	Zm.7016.1.A1_x_at	At2g17200	hypothetical protein LOC100276238	-	3e-1	At5g44610	MAP18 (Microtubule-associated Protein 18)	O.I.	H.G.	S.X.	Please select
0.11	5.3	Zm.6189.1.A1_x_at	At2g17200	Translationally controlled tumor protein-like protein	-	1e-3	At3g16640	TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN)	O.I.	H.G.	S.X.	Please select
0.04	1.5	Zm.7040.2.S1_x_at	At2g17200	hypothetical protein LOC100280354	-	2e-45	At5g49910	CPHSC70-2EAT SHOCK PROTEIN 70-2 (CHLOROPLAST HEAT SHOCK PROTEIN 70-2)	O.I.	H.G.	S.X.	Please select
0.04	1.5	Zm.5692.1.S1_at	At2g17200	hypothetical protein LOC100276119	-	1e-12	At3g12150	unknown protein	O.I.	H.G.	S.X.	Please select
0.04	1.5	Zm.5195.1.A1_at	At2g17200	ATP binding protein	-	3e+0	At1g53540	17.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

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