Co-expression analysis

Gene ID	Ta.7608.1.S1_x_at
Gene name
Homology with Arabidopsis	Similar to At2g17200: ubiquitin family protein (HF=7e-5)
Module size	6 genes
NF	0.62
%ile	87.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	89.1	0.98	Ta.7608.1.S1_x_at	CD452795	-	-	7e-5	At2g17200	ubiquitin family protein	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.98	Ta.1905.2.A1_x_at	BE446722	-	-	2e-9	At2g30110	ATUBA1	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.98	Ta.7585.1.S1_at	CK206711	-	-	3e-9	At1g72710	CKL2 (CASEIN KINASE 1-LIKE PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.53	74.9	0.98	Ta.95.1.S1_at	M90663.1	-	-	4e-32	At2g30110	ATUBA1	O.I.	H.G.	S.X.	Please select
0.53	74.9	0.98	Ta.9607.1.A1_a_at	CA708572	-	-	5e+0	At5g24510	60s acidic ribosomal protein P1, putative	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.98	Ta.1770.1.S1_a_at	CK209608	-	-	6e-1	At4g32930	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.2	94.8	GSM314270	tissue type: immature inflorescence - rep2	GSE12508	Transcription patterns during wheat development
3.2	94.8	GSM314269	tissue type: immature inflorescence - rep1	GSE12508	Transcription patterns during wheat development
2.8	93.6	GSM314271	tissue type: immature inflorescence - rep3	GSE12508	Transcription patterns during wheat development
2.8	93.6	GSM139928	Anther immature pollen rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.7	93.3	GSM139923	Anther telophaseI-telophaseII rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.6	92.9	GSM139922	Anther telophaseI-telophaseII rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.5	92.5	GSM139918	Anther leptotene-pachytene rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.4	92.0	GSM139924	Anther telophaseI-telophaseII rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.4	92.0	GSM139914	Anther pre-meiosis rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.3	91.5	GSM139920	Anther diplotene-anaphaseI rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat

Inter-species module comparison

A co-expression module including the grape gene, 1622793_at, orthologous to the query gene, Ta.7608.1.S1_x_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	87.9	1622793_at	At2g17200	hypothetical protein LOC100247146 /// hypothetical protein LOC100250759	-	3e-5	At2g17200	ubiquitin family protein	O.I.	H.G.	S.X.	Please select
0.83	94.6	1614608_at	At2g17200	similar to protein transport protein Sec24, putative	-	4e-10	At3g07100	protein transport protein Sec24, putative	O.I.	H.G.	S.X.	Please select
0.61	83.2	1613126_at	At2g17200	hypothetical protein LOC100232876	-	5e-35	At5g41950	binding	O.I.	H.G.	S.X.	Please select
0.55	77.3	1609317_at	At2g17200	ethylene receptor-like	-	5e-102	At1g66340	ETR1 (ETHYLENE RESPONSE 1)	O.I.	H.G.	S.X.	Please select
0.46	66.5	1620526_at	At2g17200	hypothetical protein LOC100261578	-	1e-104	At1g54340	ICDH (ISOCITRATE DEHYDROGENASE)	O.I.	H.G.	S.X.	Please select
0.21	24.0	1607415_at	At2g17200	hypothetical protein LOC100252123	-	9e-1	At2g01260	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Zea_mays

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