Co-expression analysis

Gene ID	Ta.7608.1.S1_x_at
Gene name
Homology with Arabidopsis	Similar to At2g17200: ubiquitin family protein (HF=7e-5)
Module size	6 genes
NF	0.62
%ile	87.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	89.1	0.98	Ta.7608.1.S1_x_at	CD452795	-	-	7e-5	At2g17200	ubiquitin family protein	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.98	Ta.1905.2.A1_x_at	BE446722	-	-	2e-9	At2g30110	ATUBA1	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.98	Ta.7585.1.S1_at	CK206711	-	-	3e-9	At1g72710	CKL2 (CASEIN KINASE 1-LIKE PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.53	74.9	0.98	Ta.95.1.S1_at	M90663.1	-	-	4e-32	At2g30110	ATUBA1	O.I.	H.G.	S.X.	Please select
0.53	74.9	0.98	Ta.9607.1.A1_a_at	CA708572	-	-	5e+0	At5g24510	60s acidic ribosomal protein P1, putative	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.98	Ta.1770.1.S1_a_at	CK209608	-	-	6e-1	At4g32930	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.2	94.8	GSM314270	tissue type: immature inflorescence - rep2	GSE12508	Transcription patterns during wheat development
3.2	94.8	GSM314269	tissue type: immature inflorescence - rep1	GSE12508	Transcription patterns during wheat development
2.8	93.6	GSM314271	tissue type: immature inflorescence - rep3	GSE12508	Transcription patterns during wheat development
2.8	93.6	GSM139928	Anther immature pollen rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.7	93.3	GSM139923	Anther telophaseI-telophaseII rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.6	92.9	GSM139922	Anther telophaseI-telophaseII rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.5	92.5	GSM139918	Anther leptotene-pachytene rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.4	92.0	GSM139924	Anther telophaseI-telophaseII rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.4	92.0	GSM139914	Anther pre-meiosis rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.3	91.5	GSM139920	Anther diplotene-anaphaseI rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat

Inter-species module comparison

A co-expression module including the barley gene, Contig4644_at, orthologous to the query gene, Ta.7608.1.S1_x_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.86	94.8	Contig4644_at	At2g17200	-	-	3e-7	At2g17200	ubiquitin family protein	O.I.	H.G.	S.X.	Please select
0.55	72.0	Contig6587_s_at	At2g17200	-	-	1e-4	At3g52470	harpin-induced family protein / HIN1 family protein / harpin-responsive family protein	O.I.	H.G.	S.X.	Please select
0.54	70.3	Contig2750_s_at	At2g17200	-	-	4e-15	At2g33150	PKT3 (PEROXISOMAL 3-KETOACYL-COA THIOLASE 3)	O.I.	H.G.	S.X.	Please select
0.51	67.5	Contig14353_at	At2g17200	-	-	9e-3	At1g49950	DNA-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.51	67.5	Contig24888_at	At2g17200	-	-	1e+0	At2g26940	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.	Please select
0.49	63.7	Contig2748_at	At2g17200	-	-	1e-2	At4g20130	PTAC14 (PLASTID TRANSCRIPTIONALLY ACTIVE14)	O.I.	H.G.	S.X.	Please select
0.49	63.7	rbags16i08_s_at	At2g17200	-	-	8e-1	At4g21330	DYT1 (DYSFUNCTIONAL TAPETUM 1)	O.I.	H.G.	S.X.	Please select
0.48	63.2	Contig3026_at	At2g17200	-	-	2e-1	At5g03980	GDSL-motif lipase/hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.47	62.2	Contig6634_at	At2g17200	-	-	9e-4	At3g09470	-	O.I.	H.G.	S.X.	Please select
0.46	61.0	Contig2749_at	At2g17200	-	-	1e+0	At1g03055	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	61.0	Contig2490_at	At2g17200	-	-	1e-6	At1g62660	beta-fructosidase (BFRUCT3) / beta-fructofuranosidase / invertase, vacuolar	O.I.	H.G.	S.X.	Please select
0.41	53.9	Contig18444_at	At2g17200	-	-	2e+0	At1g08650	PPCK1 (PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE)	O.I.	H.G.	S.X.	Please select
0.40	53.1	Contig7945_at	At2g17200	-	-	6e-57	At1g53310	ATPPC1 (PHOSPHOENOLPYRUVATE CARBOXYLASE 1)	O.I.	H.G.	S.X.	Please select
0.39	50.5	Contig18085_at	At2g17200	-	-	4e-11	At3g56370	leucine-rich repeat transmembrane protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.39	50.5	Contig22909_at	At2g17200	-	-	3e-2	At1g20550	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	49.5	Contig2147_at	At2g17200	-	-	4e+0	At5g59810	SBT5.4	O.I.	H.G.	S.X.	Please select
0.38	49.5	Contig4679_s_at	At2g17200	-	-	2e+0	At3g27820	MDAR4 (MONODEHYDROASCORBATE REDUCTASE 4)	O.I.	H.G.	S.X.	Please select
0.38	49.5	Contig20065_at	At2g17200	-	-	4e-1	At4g11600	ATGPX6 (GLUTATHIONE PEROXIDASE 6)	O.I.	H.G.	S.X.	Please select
0.37	47.9	HT08K09u_at	At2g17200	-	-	4e+0	At4g30820	cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-related	O.I.	H.G.	S.X.	Please select
0.33	42.6	HVSMEh0086G04r2_at	At2g17200	-	-	3e+0	At4g03280	PETC (PHOTOSYNTHETIC ELECTRON TRANSFER C)	O.I.	H.G.	S.X.	Please select
0.32	40.3	Contig7635_s_at	At2g17200	-	-	3e-1	At5g42630	ATS (ABERRANT TESTA SHAPE)	O.I.	H.G.	S.X.	Please select
0.32	40.3	HVSMEf0021D24f_at	At2g17200	-	-	2e+0	At2g37020	DNA binding / sequence-specific DNA binding	O.I.	H.G.	S.X.	Please select
0.32	40.3	HY09F04u_at	At2g17200	-	-	7e-1	At2g21790	RNR1 (RIBONUCLEOTIDE REDUCTASE 1)	O.I.	H.G.	S.X.	Please select
0.31	38.6	Mla12DH_orf_3pri12_at	At2g17200	-	-	6e-1	At4g23620	50S ribosomal protein-related	O.I.	H.G.	S.X.	Please select
0.29	35.5	Contig49_x_at	At2g17200	-	-	4e+0	At3g05920	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please select
0.28	35.5	Contig11836_at	At2g17200	-	-	6e-10	At1g22650	beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative	O.I.	H.G.	S.X.	Please select
0.28	35.5	Contig2_s_at	At2g17200	plasma membrane proton ATPase	-	3e-4	At2g07560	AHA6 (Arabidopsis H(+)-ATPase 6)	O.I.	H.G.	S.X.	Please select
0.27	32.1	Contig9479_s_at	At2g17200	-	-	2e+0	At5g58470	TAF15b (TBP-ASSOCIATED FACTOR 15b)	O.I.	H.G.	S.X.	Please select
0.26	30.4	Contig7226_at	At2g17200	-	-	2e-21	At3g54540	ATGCN4	O.I.	H.G.	S.X.	Please select
0.25	28.9	Contig6378_s_at	At2g17200	-	-	1e-6	At5g46250	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.25	28.9	Contig10250_at	At2g17200	-	-	2e-5	At1g04950	TAF6 (TBP-ASSOCIATED FACTOR 6)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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