Co-expression analysis

Gene ID	Ta.7590.2.S1_a_at
Gene name
Homology with Arabidopsis	Similar to At5g27490: integral membrane Yip1 family protein (HF=9e-8)
Module size	6 genes
NF	0.42
%ile	66.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	90.8	0.97	Ta.7590.2.S1_a_at	CK215141	-	-	9e-8	At5g27490	integral membrane Yip1 family protein	O.I.	H.G.	S.X.	Please select
0.61	82.0	0.97	Ta.14073.1.S1_x_at	BJ228415	-	-	5e-36	At1g09430	ACLA-3	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.98	Ta.14073.1.S1_at	BJ228415	-	-	5e-36	At1g09430	ACLA-3	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.98	Ta.16401.1.A1_s_at	BJ215044	-	-	2e-7	At4g02120	CTP synthase, putative / UTP--ammonia ligase, putative	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.97	Ta.9793.1.A1_at	BJ252593	-	-	9e-4	At5g24260	prolyl oligopeptidase family protein	O.I.	H.G.	S.X.	Please select
0.18	21.0	0.98	Ta.6850.1.S1_at	BJ311627	-	-	8e-19	At5g52210	ATGB1 (ARABIDOPSIS THALIANA GTP-BINDING PROTEIN 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.9	98.0	GSM343688	Wheat var. Kennedy_Fp inoculated_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
5.4	97.7	GSM343682	Wheat var. Kennedy_control_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
5.3	97.6	GSM298076	Crown tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
5.0	97.4	GSM343678	Wheat var. Kennedy_control_rep1	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
4.7	97.1	GSM343685	Wheat var. Kennedy_control_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
4.7	97.1	GSM298075	Crown tissue of Paragon at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
4.1	96.4	GSM343687	Wheat var. Kennedy_Fp inoculated_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
4.0	96.3	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.9	96.1	GSM298082	Leaf tissue of Solstice at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.8	96.0	GSM298057	Leaf tissue of Harnesk at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.675.5.S1_at, orthologous to the query gene, Ta.7590.2.S1_a_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.70	91.7	PtpAffx.675.5.S1_at	At5g27490	hypothetical protein	-	4e-45	At5g27490	integral membrane Yip1 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	Ptp.1847.1.A1_s_at	At5g27490	hypothetical protein	-	7e-17	At2g23070	casein kinase II alpha chain, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.52	79.4	Ptp.5102.1.A1_at	At5g27490	hypothetical protein	-	1e-88	At5g45130	RHA1 (RAB HOMOLOG 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	Ptp.5102.1.A1_x_at	At5g27490	hypothetical protein	-	1e-88	At5g45130	RHA1 (RAB HOMOLOG 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	Ptp.799.1.S1_s_at	At5g27490	hypothetical protein	-	3e-82	At4g27960	UBC9 (UBIQUITIN CONJUGATING ENZYME 9)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	Ptp.5095.2.S1_a_at	At5g27490	hypothetical protein	-	2e-83	At4g32530	vacuolar ATP synthase, putative / V-ATPase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	Ptp.2168.1.S1_at	At5g27490	-	-	2e-9	At5g25940	early nodulin-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.17561.1.A1_s_at	At5g27490	hypothetical protein	-	6e-50	At4g11150	TUF (VACUOLAR ATP SYNTHASE SUBUNIT E1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Vitis_vinifera

Zea_mays

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