Co-expression analysis

Gene ID Ta.7590.2.S1_a_at
Gene name
Homology with ArabidopsisSimilar to At5g27490: integral membrane Yip1 family protein (HF=9e-8)
Module size 6 genes
NF 0.42
%ile 66.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7790.80.97Ta.7590.2.S1_a_atCK215141--9e-8At5g27490integral membrane Yip1 family proteinO.I.H.G.S.X.
0.6182.00.97Ta.14073.1.S1_x_atBJ228415--5e-36At1g09430ACLA-3O.I.H.G.S.X.
0.5072.40.98Ta.14073.1.S1_atBJ228415--5e-36At1g09430ACLA-3O.I.H.G.S.X.
0.4464.50.98Ta.16401.1.A1_s_atBJ215044--2e-7At4g02120CTP synthase, putative / UTP--ammonia ligase, putativeO.I.H.G.S.X.
0.2735.60.97Ta.9793.1.A1_atBJ252593--9e-4At5g24260prolyl oligopeptidase family proteinO.I.H.G.S.X.
0.1821.00.98Ta.6850.1.S1_atBJ311627--8e-19At5g52210ATGB1 (ARABIDOPSIS THALIANA GTP-BINDING PROTEIN 1)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.998.0GSM343688Wheat var. Kennedy_Fp inoculated_rep3GSE13660Gene expression analysis of the wheat response to infection by Fusarium pseudograminearumLink to GEO
5.497.7GSM343682Wheat var. Kennedy_control_rep2GSE13660Gene expression analysis of the wheat response to infection by Fusarium pseudograminearumLink to GEO
5.397.6GSM298076Crown tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.097.4GSM343678Wheat var. Kennedy_control_rep1GSE13660Gene expression analysis of the wheat response to infection by Fusarium pseudograminearumLink to GEO
4.797.1GSM343685Wheat var. Kennedy_control_rep3GSE13660Gene expression analysis of the wheat response to infection by Fusarium pseudograminearumLink to GEO
4.797.1GSM298075Crown tissue of Paragon at 9 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.196.4GSM343687Wheat var. Kennedy_Fp inoculated_rep2GSE13660Gene expression analysis of the wheat response to infection by Fusarium pseudograminearumLink to GEO
4.096.3GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.996.1GSM298082Leaf tissue of Solstice at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.896.0GSM298057Leaf tissue of Harnesk at 9 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os01g0610500, orthologous to the query gene, Ta.7590.2.S1_a_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9198.9Os01g0610500At5g27490-Conserved hypothetical protein1e-14At3g05280integral membrane Yip1 family proteinO.I.H.G.S.X.
0.5371.3Os11g0433500At5g27490-Protein transport protein Sec23A (SEC23-relatedprotein A)1e-9At4g14160transport protein, putativeO.I.H.G.S.X.
0.5068.0Os01g0338000At5g27490-GTP-binding protein SAR1A1e-45At3g62560GTP-binding protein, putativeO.I.H.G.S.X.
0.4051.1Os03g0783700At5g27490-Clathrin assembly small subunit protein AP19(Clathrin assembly protein AP19, small subunit)5e-19At2g17380AP19O.I.H.G.S.X.
0.3644.0Os04g0612600At5g27490-Coatomer-like protein, epsilon subunit8e-25At2g34840coatomer protein epsilon subunit family protein / COPE family proteinO.I.H.G.S.X.
0.3236.3Os05g0461000At5g27490-Clathrin adaptor complex, small chain familyprotein5e-1At4g08520clathrin adaptor complex small chain family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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