CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.7590.2.S1_a_at

Gene name
Homology with Arabidopsis Similar to At5g27490: integral membrane Yip1 family protein (HF=9e-8)

Module size 6 genes

NF 0.42

%ile 66.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.77 90.8 0.97 Ta.7590.2.S1_a_at CK215141 - - 9e-8 At5g27490 integral membrane Yip1 family protein O.I. H.G. S.X.
0.61 82.0 0.97 Ta.14073.1.S1_x_at BJ228415 - - 5e-36 At1g09430 ACLA-3 O.I. H.G. S.X.
0.50 72.4 0.98 Ta.14073.1.S1_at BJ228415 - - 5e-36 At1g09430 ACLA-3 O.I. H.G. S.X.
0.44 64.5 0.98 Ta.16401.1.A1_s_at BJ215044 - - 2e-7 At4g02120 CTP synthase, putative / UTP--ammonia ligase, putative O.I. H.G. S.X.
0.27 35.6 0.97 Ta.9793.1.A1_at BJ252593 - - 9e-4 At5g24260 prolyl oligopeptidase family protein O.I. H.G. S.X.
0.18 21.0 0.98 Ta.6850.1.S1_at BJ311627 - - 8e-19 At5g52210 ATGB1 (ARABIDOPSIS THALIANA GTP-BINDING PROTEIN 1) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.9 98.0 GSM343688 Wheat var. Kennedy_Fp inoculated_rep3 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
5.4 97.7 GSM343682 Wheat var. Kennedy_control_rep2 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
5.3 97.6 GSM298076 Crown tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
5.0 97.4 GSM343678 Wheat var. Kennedy_control_rep1 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
4.7 97.1 GSM343685 Wheat var. Kennedy_control_rep3 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
4.7 97.1 GSM298075 Crown tissue of Paragon at 9 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
4.1 96.4 GSM343687 Wheat var. Kennedy_Fp inoculated_rep2 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
4.0 96.3 GSM298070 Leaf tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
3.9 96.1 GSM298082 Leaf tissue of Solstice at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
3.8 96.0 GSM298057 Leaf tissue of Harnesk at 9 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars

Inter-species module comparison

A co-expression module including the barley gene, Contig9005_at, orthologous to the query gene, Ta.7590.2.S1_a_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.65 81.4 Contig9005_at At5g27490 - - 1e-14 At3g05280 integral membrane Yip1 family protein O.I. H.G. S.X.
0.49 63.7 Contig4175_at At5g27490 - - 1e-19 At3g07100 protein transport protein Sec24, putative O.I. H.G. S.X.
0.37 47.9 Contig14361_at At5g27490 - - 2e-1 At2g11005 glycine-rich protein O.I. H.G. S.X.
0.36 47.1 Contig1159_s_at At5g27490 - - 1e-4 At1g62540 FMO GS-OX2 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 2) O.I. H.G. S.X.
0.36 47.1 Contig8742_at At5g27490 - - 1e-6 At3g61600 ATPOB1 O.I. H.G. S.X.
0.35 45.1 Contig11464_at At5g27490 - - 6e-20 At1g55740 AtSIP1 (Arabidopsis thaliana seed imbibition 1) O.I. H.G. S.X.
0.33 42.6 Contig8331_s_at At5g27490 - - 2e-5 At1g55255 - O.I. H.G. S.X.
0.31 38.6 Contig6232_at At5g27490 - - 8e-1 At2g01720 ribophorin I family protein O.I. H.G. S.X.
0.30 37.0 Contig5960_at At5g27490 - - 1e-16 At3g18880 ribosomal protein S17 family protein O.I. H.G. S.X.
0.30 37.0 Contig5161_s_at At5g27490 - - 9e-3 At1g54860 unknown protein O.I. H.G. S.X.
0.30 37.0 Contig3532_at At5g27490 - - 8e+0 At4g32605 - O.I. H.G. S.X.
0.29 35.5 Contig5297_at At5g27490 - - 4e-16 At1g64550 ATGCN3 O.I. H.G. S.X.
0.29 35.5 Contig11766_at At5g27490 - - 1e-2 At5g50400 PAP27 (PURPLE ACID PHOSPHATASE 27) O.I. H.G. S.X.
0.27 32.1 Contig6995_at At5g27490 - - 2e-8 At5g57270 unknown protein O.I. H.G. S.X.
0.26 30.4 Contig10592_at At5g27490 - - 1e-2 At5g26180 NOL1/NOP2/sun family protein O.I. H.G. S.X.
0.24 27.2 Contig7886_at At5g27490 - - 8e+0 At5g39790 5'-AMP-activated protein kinase beta-1 subunit-related O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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