Co-expression analysis

Gene ID	Ta.7585.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g72710: CKL2 (CASEIN KINASE 1-LIKE PROTEIN 2) (HF=3e-9)
Module size	6 genes
NF	0.57
%ile	83.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.98	Ta.7585.1.S1_at	CK206711	-	-	3e-9	At1g72710	CKL2 (CASEIN KINASE 1-LIKE PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.60	81.0	0.98	Ta.7311.1.S1_at	CK196830	-	-	2e-1	At2g45140	PVA12 (PLANT VAP HOMOLOG 12)	O.I.	H.G.	S.X.	Please select
0.57	79.2	0.98	Ta.7608.1.S1_x_at	CD452795	-	-	7e-5	At2g17200	ubiquitin family protein	O.I.	H.G.	S.X.	Please select
0.57	79.2	0.98	Ta.9607.1.A1_a_at	CA708572	-	-	5e+0	At5g24510	60s acidic ribosomal protein P1, putative	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.98	Ta.95.1.S1_at	M90663.1	-	-	4e-32	At2g30110	ATUBA1	O.I.	H.G.	S.X.	Please select
0.25	32.1	0.98	Ta.6346.1.S1_at	CK169170	-	-	3e-63	At5g06600	UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.1	94.5	GSM314270	tissue type: immature inflorescence - rep2	GSE12508	Transcription patterns during wheat development
3.1	94.5	GSM314269	tissue type: immature inflorescence - rep1	GSE12508	Transcription patterns during wheat development
2.6	92.9	GSM314271	tissue type: immature inflorescence - rep3	GSE12508	Transcription patterns during wheat development
2.3	91.5	GSM139914	Anther pre-meiosis rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.2	91.0	GSM139927	Anther tetrads rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.2	91.0	GSM139923	Anther telophaseI-telophaseII rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.2	91.0	GSM139922	Anther telophaseI-telophaseII rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.2	91.0	GSM139918	Anther leptotene-pachytene rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.2	91.0	GSM139917	Anther leptotene-pachytene rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.1	90.3	GSM139925	Anther tetrads rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.5604.1.S1_at, orthologous to the query gene, Ta.7585.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.92	99.3	PtpAffx.5604.1.S1_at	At1g72710	hypothetical protein	-	1e-114	At4g26100	CK1 (CASEIN KINASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.58	84.2	PtpAffx.44424.1.A1_s_at	At1g72710	-	-	2e+0	At3g13224	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.52	79.4	PtpAffx.7994.1.S1_at	At1g72710	hypothetical protein	-	4e-2	At2g45530	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.47	74.6	Ptp.1507.1.S1_s_at	At1g72710	hypothetical protein	-	0	At5g46630	clathrin adaptor complexes medium subunit family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.140246.1.A1_at	At1g72710	hypothetical protein	-	6e-3	At3g07100	protein transport protein Sec24, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.42	68.6	PtpAffx.14123.1.A1_s_at	At1g72710	hypothetical protein	-	9e-86	At1g78870	UBC35 (UBIQUITIN-CONJUGATING ENZYME 35)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.41	67.7	Ptp.6372.1.S1_at	At1g72710	hypothetical protein	-	1e-59	At1g15370	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	Ptp.4620.1.S1_s_at	At1g72710	hypothetical protein	-	8e-27	At3g13772	endomembrane protein 70, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.39	64.6	PtpAffx.23367.1.A1_at	At1g72710	hypothetical protein	-	8e-15	At4g02570	ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	PtpAffx.20990.1.S1_s_at	At1g72710	hypothetical protein	-	5e-42	At3g11910	UBP13 (UBIQUITIN-SPECIFIC PROTEASE 13)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	PtpAffx.116900.1.S1_s_at	At1g72710	hypothetical protein	-	5e-1	At5g49120	senescence-associated protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	PtpAffx.132407.2.A1_a_at	At1g72710	hypothetical protein	-	1e+0	At3g27890	NQR (NADPH:QUINONE OXIDOREDUCTASE)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Vitis_vinifera

Zea_mays

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