CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.7585.1.S1_at

Gene name
Homology with Arabidopsis Similar to At1g72710: CKL2 (CASEIN KINASE 1-LIKE PROTEIN 2) (HF=3e-9)

Module size 6 genes

NF 0.57

%ile 83.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.2 0.98 Ta.7585.1.S1_at CK206711 - - 3e-9 At1g72710 CKL2 (CASEIN KINASE 1-LIKE PROTEIN 2) O.I. H.G. S.X.
0.60 81.0 0.98 Ta.7311.1.S1_at CK196830 - - 2e-1 At2g45140 PVA12 (PLANT VAP HOMOLOG 12) O.I. H.G. S.X.
0.57 79.2 0.98 Ta.7608.1.S1_x_at CD452795 - - 7e-5 At2g17200 ubiquitin family protein O.I. H.G. S.X.
0.57 79.2 0.98 Ta.9607.1.A1_a_at CA708572 - - 5e+0 At5g24510 60s acidic ribosomal protein P1, putative O.I. H.G. S.X.
0.40 58.4 0.98 Ta.95.1.S1_at M90663.1 - - 4e-32 At2g30110 ATUBA1 O.I. H.G. S.X.
0.25 32.1 0.98 Ta.6346.1.S1_at CK169170 - - 3e-63 At5g06600 UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.1 94.5 GSM314270 tissue type: immature inflorescence - rep2 GSE12508 Transcription patterns during wheat development
3.1 94.5 GSM314269 tissue type: immature inflorescence - rep1 GSE12508 Transcription patterns during wheat development
2.6 92.9 GSM314271 tissue type: immature inflorescence - rep3 GSE12508 Transcription patterns during wheat development
2.3 91.5 GSM139914 Anther pre-meiosis rep2 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.2 91.0 GSM139927 Anther tetrads rep3 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.2 91.0 GSM139923 Anther telophaseI-telophaseII rep2 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.2 91.0 GSM139922 Anther telophaseI-telophaseII rep1 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.2 91.0 GSM139918 Anther leptotene-pachytene rep3 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.2 91.0 GSM139917 Anther leptotene-pachytene rep2 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.1 90.3 GSM139925 Anther tetrads rep1 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat

Inter-species module comparison

A co-expression module including the barley gene, Contig6177_at, orthologous to the query gene, Ta.7585.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 84.7 Contig6177_at At1g72710 - - 6e-95 At1g72710 CKL2 (CASEIN KINASE 1-LIKE PROTEIN 2) O.I. H.G. S.X.
0.60 77.3 Contig19472_at At1g72710 - - 5e-1 At4g15150 glycine-rich protein O.I. H.G. S.X.
0.31 38.6 Contig14490_at At1g72710 - - 1e+0 At5g17810 WOX12 (WUSCHEL related homeobox 12) O.I. H.G. S.X.
0.04 3.4 HVSMEk0010K24f_s_at At1g72710 - - 3e-3 At5g41430 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.04 3.4 Contig14238_at At1g72710 - - 3e-5 At1g30825 DIS2 (DISTORTED TRICHOMES 2) O.I. H.G. S.X.
0.02 1.8 HVSMEa0009H20r2_at At1g72710 - - 4e+0 At3g11620 unknown protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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