CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.7585.1.S1_at

Gene name
Homology with Arabidopsis Similar to At1g72710: CKL2 (CASEIN KINASE 1-LIKE PROTEIN 2) (HF=3e-9)

Module size 6 genes

NF 0.57

%ile 83.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.2 0.98 Ta.7585.1.S1_at CK206711 - - 3e-9 At1g72710 CKL2 (CASEIN KINASE 1-LIKE PROTEIN 2) O.I. H.G. S.X.
0.60 81.0 0.98 Ta.7311.1.S1_at CK196830 - - 2e-1 At2g45140 PVA12 (PLANT VAP HOMOLOG 12) O.I. H.G. S.X.
0.57 79.2 0.98 Ta.7608.1.S1_x_at CD452795 - - 7e-5 At2g17200 ubiquitin family protein O.I. H.G. S.X.
0.57 79.2 0.98 Ta.9607.1.A1_a_at CA708572 - - 5e+0 At5g24510 60s acidic ribosomal protein P1, putative O.I. H.G. S.X.
0.40 58.4 0.98 Ta.95.1.S1_at M90663.1 - - 4e-32 At2g30110 ATUBA1 O.I. H.G. S.X.
0.25 32.1 0.98 Ta.6346.1.S1_at CK169170 - - 3e-63 At5g06600 UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.1 94.5 GSM314270 tissue type: immature inflorescence - rep2 GSE12508 Transcription patterns during wheat development
3.1 94.5 GSM314269 tissue type: immature inflorescence - rep1 GSE12508 Transcription patterns during wheat development
2.6 92.9 GSM314271 tissue type: immature inflorescence - rep3 GSE12508 Transcription patterns during wheat development
2.3 91.5 GSM139914 Anther pre-meiosis rep2 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.2 91.0 GSM139927 Anther tetrads rep3 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.2 91.0 GSM139923 Anther telophaseI-telophaseII rep2 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.2 91.0 GSM139922 Anther telophaseI-telophaseII rep1 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.2 91.0 GSM139918 Anther leptotene-pachytene rep3 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.2 91.0 GSM139917 Anther leptotene-pachytene rep2 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.1 90.3 GSM139925 Anther tetrads rep1 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At1g72710, orthologous to the query gene, Ta.7585.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.44 57.2 At1g72710 843603 CKL2 (CASEIN KINASE 1-LIKE PROTEIN 2) Encodes a member of the casein kinase 1 protein family that is localized to the cytoplasm and nucleus. O.I. H.G. S.X.
0.67 81.6 At3g60030 825173 SPL12 (squamosa promoter-binding protein-like 12) F:transcription factor activity;P:regulation of transcription;C:nucleus;PMO O.I. H.G. S.X.
0.36 43.6 At4g14990 827158 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF O.I. H.G. S.X.
0.31 33.8 At5g23450 832411 ATLCBK1 (A. THALIANA LONG-CHAIN BASE (LCB) KINASE 1) Encodes a sphingosine kinase that specifically phosphorylates D-erythro-dihydrosphingosine (DHS), but not N-acetyl-DHS or D-threo-DHS. It also also phosphorylates D-erythro-sphingosine, trans-4, trans-8-sphingadienine and phytosphingosine. O.I. H.G. S.X.
0.26 24.4 At2g03330 814862 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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