Co-expression analysis

Gene ID	Ta.7537.2.S1_x_at
Gene name
Homology with Arabidopsis	Similar to At5g22390: unknown protein (HF=1e+0)
Module size	21 genes
NF	0.27
%ile	45.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.85	93.8	0.93	Ta.7537.2.S1_x_at	CA648066	-	-	1e+0	At5g22390	unknown protein	O.I.	H.G.	S.X.	Please select
0.54	75.5	0.95	TaAffx.32265.1.S1_at	CA597903	-	-	8e-1	At1g12340	-	O.I.	H.G.	S.X.	Please select
0.49	69.7	0.95	TaAffx.131315.1.S1_at	BJ278064	-	-	2e-5	At4g09810	transporter-related	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.94	Ta.6249.1.S1_at	BJ300528	-	-	4e+0	At1g36100	myosin heavy chain-related	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.95	TaAffx.24703.1.S1_at	CA714044	-	-	1e+1	At1g44920	unknown protein	O.I.	H.G.	S.X.	Please select
0.34	48.1	0.95	Ta.7861.2.S1_a_at	CA692192	-	-	9e-1	At4g19640	ARA7	O.I.	H.G.	S.X.	Please select
0.34	48.1	0.94	TaAffx.87368.1.S1_at	BU100147	-	-	9e+0	At4g00420	double-stranded RNA-binding domain (DsRBD)-containing protein	O.I.	H.G.	S.X.	Please select
0.32	44.4	0.94	TaAffx.111296.1.S1_x_at	CA644002	-	-	9e-1	At2g01060	myb family transcription factor	O.I.	H.G.	S.X.	Please select
0.30	40.9	0.95	Ta.3463.3.S1_a_at	CA681836	-	-	2e-5	At4g36410	UBC17 (UBIQUITIN-CONJUGATING ENZYME 17)	O.I.	H.G.	S.X.	Please select
0.25	32.1	0.95	TaAffx.51129.1.S1_at	CA730664	-	-	3e-1	At4g10970	unknown protein	O.I.	H.G.	S.X.	Please select
0.24	30.3	0.95	TaAffx.55517.1.S1_at	CA665017	-	-	3e+1	At5g11280	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	29.0	0.95	Ta.9859.1.A1_at	BJ233353	-	-	1e-3	At2g03800	GEK1 (GEKO1)	O.I.	H.G.	S.X.	Please select
0.21	25.5	0.95	Ta.9630.2.S1_at	CA691213	-	-	2e-1	At1g80160	lactoylglutathione lyase family protein / glyoxalase I family protein	O.I.	H.G.	S.X.	Please select
0.19	22.4	0.95	Ta.6295.3.S1_at	CA656076	-	-	3e-1	At3g61890	ATHB-12 (ARABIDOPSIS THALIANA HOMEOBOX 12)	O.I.	H.G.	S.X.	Please select
0.19	22.4	0.96	Ta.8613.1.A1_at	BQ162128	-	-	1e+0	At2g35700	ERF38 (ERF FAMILY PROTEIN 38)	O.I.	H.G.	S.X.	Please select
0.17	19.8	0.96	TaAffx.83463.1.S1_at	CA697862	-	-	1e+0	At4g36620	zinc finger (GATA type) family protein	O.I.	H.G.	S.X.	Please select
0.16	18.2	0.95	TaAffx.105929.1.S1_at	BJ226774	-	-	4e+0	At5g19875	unknown protein	O.I.	H.G.	S.X.	Please select
0.16	18.2	0.96	Ta.16326.1.S1_at	BJ306642	-	-	1e+0	At5g23950	C2 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.16	18.2	0.95	TaAffx.14645.1.S1_at	CA737282	-	-	2e+0	At3g32100	unknown protein	O.I.	H.G.	S.X.	Please select
0.15	17.1	0.97	Ta.13635.2.S1_a_at	CA499433	-	-	1e-11	At1g55270	kelch repeat-containing F-box family protein	O.I.	H.G.	S.X.	Please select
0.12	13.3	0.96	Ta.9020.2.S1_a_at	BQ606451	-	-	1e+0	At5g03030	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.4	98.2	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.6	97.0	GSM314275	tissue type: pistil, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
4.0	96.3	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.9	96.1	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.8	96.0	GSM314277	tissue type: pistil, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
3.7	95.8	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.6	95.6	GSM314276	tissue type: pistil, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
3.4	95.2	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.2	94.8	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.1	94.5	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage