Co-expression analysis

Gene ID	Ta.7524.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At1g01060: LHY (LATE ELONGATED HYPOCOTYL) (HF=6e-7)
Module size	6 genes
NF	0.79
%ile	96.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.96	Ta.7524.1.A1_at	BJ250276	-	-	6e-7	At1g01060	LHY (LATE ELONGATED HYPOCOTYL)	O.I.	H.G.	S.X.	Please select
0.80	92.2	0.95	Ta.3823.1.S1_at	CD865280	-	-	1e-1	At1g04555	unknown protein	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.95	Ta.7524.2.A1_a_at	BF200486	-	-	3e-3	At2g40410	Ca(2+)-dependent nuclease, putative	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.96	TaAffx.28555.1.S1_s_at	CA658793	-	-	2e+1	At5g50423	-	O.I.	H.G.	S.X.	Please select
0.73	89.1	0.96	Ta.7524.2.A1_x_at	BF200486	-	-	3e-3	At2g40410	Ca(2+)-dependent nuclease, putative	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.96	Ta.13268.1.S1_at	BJ229779	-	-	8e-5	At3g16560	protein phosphatase 2C-related / PP2C-related	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
19.1	99.7	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
6.5	98.3	GSM324485	Si- B- rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
5.2	97.5	GSM324486	Si- B- rep3	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
4.9	97.3	GSM324490	Si+ B- rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
4.6	97.0	GSM324491	Si+ B- rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
4.3	96.7	GSM143511	Thatcher_Lr34 (resistant), mock inoculated distal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.9	96.1	GSM143521	Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.8	96.0	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.8	96.0	GSM143501	Jupateco_Lr34 (susceptible), mock inoculated distal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.7	95.8	GSM324492	Si+ B- rep3	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage