Co-expression analysis

Gene ID	Ta.7506.2.S1_a_at
Gene name
Homology with Arabidopsis	Similar to At1g27650: ATU2AF35A (HF=5e-15)
Module size	6 genes
NF	0.63
%ile	88.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	93.4	0.97	Ta.7506.2.S1_a_at	BJ267303	-	-	5e-15	At1g27650	ATU2AF35A	O.I.	H.G.	S.X.	Please select
0.60	81.0	0.97	TaAffx.87003.1.S1_s_at	CA597427	-	-	4e-3	At4g19150	ankyrin repeat family protein	O.I.	H.G.	S.X.	Please select
0.56	78.6	0.96	Ta.28206.3.S1_a_at	CA661286	-	-	2e-2	At3g02220	unknown protein	O.I.	H.G.	S.X.	Please select
0.55	76.8	0.97	Ta.8142.1.S1_at	BQ752849	-	-	3e-15	At1g61620	phosphoinositide binding	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.97	Ta.2207.2.S1_a_at	CA612248	-	-	5e-25	At5g05780	RPN8A (RP NON-ATPASE SUBUNIT 8A)	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.97	TaAffx.77390.1.S1_at	CD893386	histone deacetylase	-	1e-19	At5g63110	HDA6 (HISTONE DEACETYLASE 6)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.4	96.8	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.1	96.4	GSM314258	tissue type: germinating seed, embryo - rep2	GSE12508	Transcription patterns during wheat development
3.9	96.1	GSM298064	Crown tissue of Harnesk at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.4	95.2	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
3.2	94.8	GSM314259	tissue type: germinating seed, embryo - rep3	GSE12508	Transcription patterns during wheat development
3.2	94.8	GSM298063	Crown tissue of Harnesk at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.1	94.5	GSM298076	Crown tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.0	94.3	GSM298062	Crown tissue of Harnesk at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.0	94.3	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.0	94.3	GSM298061	Crown tissue of Harnesk at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

A co-expression module including the maize gene, Zm.4357.3.S1_at, orthologous to the query gene, Ta.7506.2.S1_a_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.90	97.0	Zm.4357.3.S1_at	At1g27650	hypothetical protein LOC100191858 /// splicing factor U2af 38 kDa subunit	-	3e-22	At1g27650	ATU2AF35A	O.I.	H.G.	S.X.	Please select
0.55	71.6	Zm.8321.1.S1_at	At1g27650	calcium-dependent protein kinase, isoform AK1	-	3e+0	At5g61350	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	Zm.7564.1.A1_at	At1g27650	-	-	4e-1	At3g59060	PIL6 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 6)	O.I.	H.G.	S.X.	Please select
0.50	65.7	Zm.2631.1.S1_at	At1g27650	hypothetical protein LOC100191885	-	5e-5	At2g21730	CAD2 (CINNAMYL ALCOHOL DEHYDROGENASE HOMOLOG 2)	O.I.	H.G.	S.X.	Please select
0.48	61.3	Zm.3633.2.S1_x_at	At1g27650	APx1 - Cytosolic Ascorbate Peroxidase	-	3e-28	At1g07890	APX1 (ascorbate peroxidase 1)	O.I.	H.G.	S.X.	Please select
0.48	61.3	Zm.9542.1.A1_at	At1g27650	hypothetical protein LOC100192045	-	3e-16	At4g16170	unknown protein	O.I.	H.G.	S.X.	Please select
0.48	61.3	Zm.11551.1.A1_at	At1g27650	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imi dazole-4-carboxamide isomerase	-	4e-1	At4g17960	unknown protein	O.I.	H.G.	S.X.	Please select
0.48	61.3	Zm.5948.1.A1_at	At1g27650	hypothetical protein LOC100191184	-	1e+1	At5g22220	-	O.I.	H.G.	S.X.	Please select
0.46	58.4	Zm.9775.1.A1_at	At1g27650	-	-	1e+0	At2g40880	ATCYSA (CYSTATIN A)	O.I.	H.G.	S.X.	Please select
0.46	58.4	Zm.9828.1.A1_at	At1g27650	zinc finger protein 7	-	3e-1	At2g20260	PSAE-2 (photosystem I subunit E-2)	O.I.	H.G.	S.X.	Please select
0.45	56.4	Zm.1773.1.S1_at	At1g27650	hypothetical protein LOC100193052 /// hypothetical protein LOC100273661 /// hypothetical protein LOC100274588	-	6e-4	At5g06370	NC domain-containing protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	Zm.12528.1.A1_at	At1g27650	hypothetical protein LOC100274560	-	3e+0	At5g50740	metal ion binding	O.I.	H.G.	S.X.	Please select
0.43	52.8	Zm.628.1.A1_at	At1g27650	glutathione S-transferase12	-	6e-1	At3g21960	-	O.I.	H.G.	S.X.	Please select
0.43	52.8	Zm.478.1.A1_at	At1g27650	CRS2	-	2e-7	At5g16140	peptidyl-tRNA hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.42	51.3	Zm.14324.1.A1_at	At1g27650	ribonucleoside-diphosphate reductase small chain	-	5e-26	At3g27060	TSO2 (TSO meaning 'ugly' in Chinese)	O.I.	H.G.	S.X.	Please select
0.41	49.7	Zm.9989.1.A1_at	At1g27650	DNA binding protein	-	5e+0	At5g03090	unknown protein	O.I.	H.G.	S.X.	Please select
0.41	49.7	Zm.1067.2.A1_at	At1g27650	vacuolar ATP synthase 16 kDa proteolipid subunit	-	2e-56	At1g75630	AVA-P4	O.I.	H.G.	S.X.	Please select
0.41	49.7	Zm.16017.1.A1_at	At1g27650	-	-	2e-4	At5g08415	lipoic acid synthase family protein	O.I.	H.G.	S.X.	Please select
0.40	48.5	Zm.5608.1.S1_a_at	At1g27650	-	-	8e+0	At4g17650	aromatic-rich family protein	O.I.	H.G.	S.X.	Please select
0.40	48.5	Zm.8466.1.S1_at	At1g27650	macrophage migration inhibitory factor	-	4e-11	At5g01650	macrophage migration inhibitory factor family protein / MIF family protein	O.I.	H.G.	S.X.	Please select
0.37	42.3	Zm.4755.1.A1_at	At1g27650	-	-	8e-9	At5g14040	mitochondrial phosphate transporter	O.I.	H.G.	S.X.	Please select
0.35	38.9	Zm.10872.1.A1_at	At1g27650	-	-	1e-8	At1g59990	DEAD/DEAH box helicase, putative (RH22)	O.I.	H.G.	S.X.	Please select
0.35	38.9	Zm.18051.1.A1_at	At1g27650	-	-	2e+0	At3g13674	unknown protein	O.I.	H.G.	S.X.	Please select
0.34	37.2	Zm.326.1.S1_at	At1g27650	response regulator 7	-	3e+0	At5g41761	unknown protein	O.I.	H.G.	S.X.	Please select
0.34	37.2	Zm.17796.1.S1_at	At1g27650	-	-	5e-1	At3g23130	SUP (SUPERMAN)	O.I.	H.G.	S.X.	Please select
0.33	36.0	Zm.4617.1.A1_at	At1g27650	-	-	2e+0	At3g54270	sucrose-phosphatase 3 (SPP3)	O.I.	H.G.	S.X.	Please select
0.33	36.0	Zm.18825.1.A1_at	At1g27650	hypothetical protein LOC100194340	-	8e+0	At3g17675	copper ion binding / electron carrier	O.I.	H.G.	S.X.	Please select
0.30	29.8	Zm.17192.1.A1_at	At1g27650	-	-	5e+0	At2g22520	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	29.8	Zm.12993.1.A1_at	At1g27650	hypothetical protein LOC100273862	-	3e-2	At3g04380	SUVR4	O.I.	H.G.	S.X.	Please select
0.29	28.1	Zm.19241.1.A1_at	At1g27650	WW domain-containing oxidoreductase	-	6e+0	At4g22160	unknown protein	O.I.	H.G.	S.X.	Please select
0.28	28.1	Zm.6454.1.A1_at	At1g27650	PP1/PP2A phosphatases pleiotropic regulator PRL1	-	9e-29	At4g15900	PRL1 (PLEIOTROPIC REGULATORY LOCUS 1)	O.I.	H.G.	S.X.	Please select
0.27	24.6	Zm.2454.1.A1_at	At1g27650	DNA-binding protein	-	3e-4	At4g25320	DNA-binding protein-related	O.I.	H.G.	S.X.	Please select
0.27	24.6	Zm.14877.1.S1_at	At1g27650	-	-	1e+0	At1g59700	ATGSTU16 (GLUTATHIONE S-TRANSFERASE TAU 16)	O.I.	H.G.	S.X.	Please select
0.26	22.7	Zm.5207.1.S1_at	At1g27650	hypothetical protein LOC100192596	-	5e-23	At4g03120	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.26	22.7	Zm.4385.1.S1_at	At1g27650	small nuclear ribonucleoprotein-associated protein B	-	3e-15	At5g44500	small nuclear ribonucleoprotein associated protein B, putative / snRNP-B, putative / Sm protein B, putative	O.I.	H.G.	S.X.	Please select
0.26	22.7	Zm.18946.1.A1_at	At1g27650	hypothetical protein LOC100278262	-	1e+0	At1g69660	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	O.I.	H.G.	S.X.	Please select
0.26	22.7	Zm.14115.1.A1_at	At1g27650	hypothetical protein LOC100278990	-	2e+0	At5g19750	peroxisomal membrane 22 kDa family protein	O.I.	H.G.	S.X.	Please select
0.25	21.3	Zm.11605.1.A1_at	At1g27650	-	-	4e+0	At4g11930	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	21.3	Zm.4132.1.A1_at	At1g27650	hypothetical protein LOC100276765	-	4e-14	At1g16520	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	21.3	Zm.16572.1.A1_at	At1g27650	-	-	5e+0	At2g27228	CPuORF6 (Conserved peptide upstream open reading frame 6)	O.I.	H.G.	S.X.	Please select
0.24	19.8	Zm.13771.1.A1_at	At1g27650	hypothetical protein LOC100216812	-	1e-17	At1g72710	CKL2 (CASEIN KINASE 1-LIKE PROTEIN 2)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

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