Co-expression analysis

Gene ID Ta.7506.2.S1_a_at
Gene name
Homology with ArabidopsisSimilar to At1g27650: ATU2AF35A (HF=5e-15)
Module size 6 genes
NF 0.63
%ile 88.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8393.40.97Ta.7506.2.S1_a_atBJ267303--5e-15At1g27650ATU2AF35AO.I.H.G.S.X.
0.6081.00.97TaAffx.87003.1.S1_s_atCA597427--4e-3At4g19150ankyrin repeat family proteinO.I.H.G.S.X.
0.5678.60.96Ta.28206.3.S1_a_atCA661286--2e-2At3g02220unknown proteinO.I.H.G.S.X.
0.5576.80.97Ta.8142.1.S1_atBQ752849--3e-15At1g61620phosphoinositide bindingO.I.H.G.S.X.
0.5072.40.97Ta.2207.2.S1_a_atCA612248--5e-25At5g05780RPN8A (RP NON-ATPASE SUBUNIT 8A)O.I.H.G.S.X.
0.4058.40.97TaAffx.77390.1.S1_atCD893386histone deacetylase-1e-19At5g63110HDA6 (HISTONE DEACETYLASE 6)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.496.8GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.196.4GSM314258tissue type: germinating seed, embryo - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
3.996.1GSM298064Crown tissue of Harnesk at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.495.2GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.294.8GSM314259tissue type: germinating seed, embryo - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
3.294.8GSM298063Crown tissue of Harnesk at 9 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.194.5GSM298076Crown tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.094.3GSM298062Crown tissue of Harnesk at 5 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.094.3GSM250899TcLr34_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.094.3GSM298061Crown tissue of Harnesk at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.201516.1.S1_at, orthologous to the query gene, Ta.7506.2.S1_a_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8497.1PtpAffx.201516.1.S1_atAt1g27650hypothetical protein-5e-69At1g27650ATU2AF35AO.I.H.G.S.X.
0.6086.0PtpAffx.210841.1.S1_atAt1g27650chromatin remodeling complex subunit-6e-2At5g60830AtbZIP70 (Arabidopsis thaliana basic leucine-zipper 70)O.I.H.G.S.X.
0.2747.1PtpAffx.54906.1.S1_atAt1g27650--1e-8At1g57680-O.I.H.G.S.X.
0.2441.8PtpAffx.215417.1.S1_atAt1g27650hypothetical protein-3e-173At5g15680bindingO.I.H.G.S.X.
0.2034.6PtpAffx.34905.2.A1_a_atAt1g27650--1e+0At4g28250ATEXPB3 (ARABIDOPSIS THALIANA EXPANSIN B3)O.I.H.G.S.X.
0.1932.7PtpAffx.140774.1.A1_atAt1g27650hypothetical protein-1e+0At4g21620glycine-rich proteinO.I.H.G.S.X.
0.1626.9Ptp.7945.1.S1_atAt1g27650hypothetical protein-6e+0At5g47060senescence-associated protein-relatedO.I.H.G.S.X.
0.1219.6PtpAffx.202430.1.S1_s_atAt1g27650hypothetical protein-1e+0At4g03090sequence-specific DNA binding / transcription factorO.I.H.G.S.X.
0.0711.6PtpAffx.201256.1.S1_s_atAt1g27650hypothetical protein-1e-6At1g50620PHD finger family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage