CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.7506.2.S1_a_at

Gene name
Homology with Arabidopsis Similar to At1g27650: ATU2AF35A (HF=5e-15)

Module size 6 genes

NF 0.63

%ile 88.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.83 93.4 0.97 Ta.7506.2.S1_a_at BJ267303 - - 5e-15 At1g27650 ATU2AF35A O.I. H.G. S.X.
0.60 81.0 0.97 TaAffx.87003.1.S1_s_at CA597427 - - 4e-3 At4g19150 ankyrin repeat family protein O.I. H.G. S.X.
0.56 78.6 0.96 Ta.28206.3.S1_a_at CA661286 - - 2e-2 At3g02220 unknown protein O.I. H.G. S.X.
0.55 76.8 0.97 Ta.8142.1.S1_at BQ752849 - - 3e-15 At1g61620 phosphoinositide binding O.I. H.G. S.X.
0.50 72.4 0.97 Ta.2207.2.S1_a_at CA612248 - - 5e-25 At5g05780 RPN8A (RP NON-ATPASE SUBUNIT 8A) O.I. H.G. S.X.
0.40 58.4 0.97 TaAffx.77390.1.S1_at CD893386 histone deacetylase - 1e-19 At5g63110 HDA6 (HISTONE DEACETYLASE 6) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.4 96.8 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.1 96.4 GSM314258 tissue type: germinating seed, embryo - rep2 GSE12508 Transcription patterns during wheat development
3.9 96.1 GSM298064 Crown tissue of Harnesk at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
3.4 95.2 GSM298092 Crown tissue of Solstice at 3 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
3.2 94.8 GSM314259 tissue type: germinating seed, embryo - rep3 GSE12508 Transcription patterns during wheat development
3.2 94.8 GSM298063 Crown tissue of Harnesk at 9 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
3.1 94.5 GSM298076 Crown tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
3.0 94.3 GSM298062 Crown tissue of Harnesk at 5 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
3.0 94.3 GSM250899 TcLr34_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.0 94.3 GSM298061 Crown tissue of Harnesk at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars

Inter-species module comparison

A co-expression module including the rice gene, Os05g0564200, orthologous to the query gene, Ta.7506.2.S1_a_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.55 73.7 Os05g0564200 At1g27650 - U2 snRNP auxiliary factor, small subunit 2e-22 At1g27650 ATU2AF35A O.I. H.G. S.X.
0.67 87.2 Os03g0758800 At1g27650 - Eukaryotic translation initiation factor 5A-2(eIF-5A) (eIF-4D) 7e-31 At1g69410 ELF5A-3 (EUKARYOTIC ELONGATION FACTOR 5A-3) O.I. H.G. S.X.
0.61 81.2 Os04g0118400 At1g27650 - Elongation factor EF-2 (Fragment) 0 At1g56070 LOS1 O.I. H.G. S.X.
0.55 73.7 Os05g0445500 At1g27650 - 60S acidic ribosomal protein P2B 4e-10 At2g27720 60S acidic ribosomal protein P2 (RPP2A) O.I. H.G. S.X.
0.47 62.3 Os02g0519900 At1g27650 - Elongation factor EF-2 (Fragment) 0 At1g56070 LOS1 O.I. H.G. S.X.
0.19 15.1 Os08g0558800 At1g27650 - 60S ribosomal protein L10a-3 4e-63 At5g22440 60S ribosomal protein L10A (RPL10aC) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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