Co-expression analysis

Gene ID	Ta.7506.2.S1_a_at
Gene name
Homology with Arabidopsis	Similar to At1g27650: ATU2AF35A (HF=5e-15)
Module size	6 genes
NF	0.63
%ile	88.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	93.4	0.97	Ta.7506.2.S1_a_at	BJ267303	-	-	5e-15	At1g27650	ATU2AF35A	O.I.	H.G.	S.X.	Please select
0.60	81.0	0.97	TaAffx.87003.1.S1_s_at	CA597427	-	-	4e-3	At4g19150	ankyrin repeat family protein	O.I.	H.G.	S.X.	Please select
0.56	78.6	0.96	Ta.28206.3.S1_a_at	CA661286	-	-	2e-2	At3g02220	unknown protein	O.I.	H.G.	S.X.	Please select
0.55	76.8	0.97	Ta.8142.1.S1_at	BQ752849	-	-	3e-15	At1g61620	phosphoinositide binding	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.97	Ta.2207.2.S1_a_at	CA612248	-	-	5e-25	At5g05780	RPN8A (RP NON-ATPASE SUBUNIT 8A)	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.97	TaAffx.77390.1.S1_at	CD893386	histone deacetylase	-	1e-19	At5g63110	HDA6 (HISTONE DEACETYLASE 6)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.4	96.8	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.1	96.4	GSM314258	tissue type: germinating seed, embryo - rep2	GSE12508	Transcription patterns during wheat development
3.9	96.1	GSM298064	Crown tissue of Harnesk at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.4	95.2	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
3.2	94.8	GSM314259	tissue type: germinating seed, embryo - rep3	GSE12508	Transcription patterns during wheat development
3.2	94.8	GSM298063	Crown tissue of Harnesk at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.1	94.5	GSM298076	Crown tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.0	94.3	GSM298062	Crown tissue of Harnesk at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.0	94.3	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.0	94.3	GSM298061	Crown tissue of Harnesk at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

A co-expression module including the barley gene, Contig4648_at, orthologous to the query gene, Ta.7506.2.S1_a_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	87.1	Contig4648_at	At1g27650	-	-	2e-10	At5g42820	U2AF35B	O.I.	H.G.	S.X.	Please select
0.38	49.5	Contig13549_at	At1g27650	-	-	2e+0	At3g20230	50S ribosomal protein L18 family	O.I.	H.G.	S.X.	Please select
0.35	45.1	Contig6445_s_at	At1g27650	-	-	1e-1	At2g20920	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	30.4	Contig15558_at	At1g27650	-	-	1e+0	At1g12080	unknown protein	O.I.	H.G.	S.X.	Please select
0.24	27.2	Contig11497_at	At1g27650	-	-	8e-1	At2g37300	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	24.2	Contig5459_s_at	At1g27650	-	-	6e-12	At3g26618	ERF1-3 (eukaryotic release factor 1-3)	O.I.	H.G.	S.X.	Please select
0.19	19.6	HS09P03u_s_at	At1g27650	-	-	7e-2	At4g25760	AtGDU2 (Arabidopsis thaliana GLUTAMINE DUMPER 2)	O.I.	H.G.	S.X.	Please select
0.19	19.6	Contig12862_at	At1g27650	-	-	4e-2	At3g58570	DEAD box RNA helicase, putative	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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